Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004331A_C01 KMC004331A_c01
(405 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198917.1| putative protein; protein id: At5g41010.1, supp... 103 7e-22
ref|XP_127976.1| metallothionein-I activator [Mus musculus] gi|2... 71 4e-12
ref|NP_005025.1| DNA directed RNA polymerase II polypeptide K; p... 71 4e-12
dbj|BAB25485.2| unnamed protein product [Mus musculus] gi|263599... 71 4e-12
gb|AAB27565.2| metallothionein-I gene transcription activator [M... 71 4e-12
>ref|NP_198917.1| putative protein; protein id: At5g41010.1, supported by cDNA:
gi_19310614 [Arabidopsis thaliana]
gi|9759147|dbj|BAB09703.1| contains similarity to
metallothionein-I gene transcription
activator~gene_id:MEE6.8 [Arabidopsis thaliana]
gi|15028303|gb|AAK76628.1| unknown protein [Arabidopsis
thaliana] gi|19310615|gb|AAL85038.1| unknown protein
[Arabidopsis thaliana] gi|21618239|gb|AAM67289.1| DNA
directed RNA polymerase II polypeptide K [Arabidopsis
thaliana]
Length = 51
Score = 103 bits (256), Expect = 7e-22
Identities = 44/51 (86%), Positives = 48/51 (93%)
Frame = -1
Query: 381 MDPQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYQKRTRRIVQYEAR 229
MDP PEPV+Y+CGDCG ENTLK GDVIQCRECGYRILY+KRTRR+VQYEAR
Sbjct: 1 MDPAPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>ref|XP_127976.1| metallothionein-I activator [Mus musculus]
gi|2842662|sp|Q63871|RPCX_MOUSE DNA-directed RNA
polymerases I, II, and III 7.0 kDa polypeptide
(ABC10-alpha) (RPB7.0) (Metallothionein-I gene
transcription activator) gi|12833421|dbj|BAB22516.1|
unnamed protein product [Mus musculus]
gi|20306771|gb|AAH28543.1| Similar to polymerase (RNA)
II (DNA directed) polypeptide K (7.0kD) [Mus musculus]
Length = 58
Score = 70.9 bits (172), Expect = 4e-12
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = -1
Query: 375 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYQKRTRRIVQYEAR 229
P+ +P+ YICG+C EN +K D I+CRECGYRI+Y+KRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>ref|NP_005025.1| DNA directed RNA polymerase II polypeptide K; polymerase (RNA) II
(DNA directed) polypeptide K (7.0kD); DNA directed RNA
polymerases I, II, and III 7.0 kda polypeptide [Homo
sapiens] gi|1710664|sp|P53803|RPCX_HUMAN DNA-directed
RNA polymerases I, II, and III 7.0 kDa polypeptide
(ABC10-alpha) (RPB7.0) (RPB10alpha)
gi|7451882|pir||I37558 RNA polymerase II - human
gi|717187|emb|CAA87656.1| RNA polymerase II [Homo
sapiens] gi|7981272|emb|CAB91873.1| RPB10alpha [Homo
sapiens] gi|12654013|gb|AAH00806.1|AAH00806 polymerase
(RNA) II (DNA directed) polypeptide K (7.0kD) [Homo
sapiens] gi|17390349|gb|AAH18157.1|AAH18157 polymerase
(RNA) II (DNA directed) polypeptide K (7.0kD) [Homo
sapiens]
Length = 58
Score = 70.9 bits (172), Expect = 4e-12
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = -1
Query: 375 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYQKRTRRIVQYEAR 229
P+ +P+ YICG+C EN +K D I+CRECGYRI+Y+KRT+R+V ++AR
Sbjct: 10 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58
>dbj|BAB25485.2| unnamed protein product [Mus musculus] gi|26359970|dbj|BAB25578.2|
unnamed protein product [Mus musculus]
Length = 99
Score = 70.9 bits (172), Expect = 4e-12
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = -1
Query: 375 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYQKRTRRIVQYEAR 229
P+ +P+ YICG+C EN +K D I+CRECGYRI+Y+KRT+R+V ++AR
Sbjct: 51 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 99
>gb|AAB27565.2| metallothionein-I gene transcription activator [Mus sp.]
Length = 105
Score = 70.9 bits (172), Expect = 4e-12
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = -1
Query: 375 PQPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYQKRTRRIVQYEAR 229
P+ +P+ YICG+C EN +K D I+CRECGYRI+Y+KRT+R+V ++AR
Sbjct: 57 PKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 327,608,994
Number of Sequences: 1393205
Number of extensions: 6324281
Number of successful extensions: 17322
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 16862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17315
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
