Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004328A_C01 KMC004328A_c01
(633 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181673.1| unknown protein; protein id: At2g41420.1 [Arabi... 133 2e-30
emb|CAA71756.1| hypothetical protein [Sporobolus stapfianus] 120 1e-26
gb|AAM63525.1| unknown [Arabidopsis thaliana] 105 5e-22
ref|NP_569052.1| expressed protein; protein id: At5g67600.1, sup... 104 8e-22
ref|NP_190553.1| putative protein; protein id: At3g49840.1 [Arab... 100 2e-20
>ref|NP_181673.1| unknown protein; protein id: At2g41420.1 [Arabidopsis thaliana]
gi|7487447|pir||T02437 hypothetical protein At2g41420
[imported] - Arabidopsis thaliana
gi|20197423|gb|AAM15069.1| unknown protein [Arabidopsis
thaliana] gi|27808506|gb|AAO24533.1| At2g41420
[Arabidopsis thaliana]
Length = 98
Score = 133 bits (335), Expect = 2e-30
Identities = 58/75 (77%), Positives = 59/75 (78%)
Frame = -1
Query: 630 YPPQGYPPQGYPPPGYPPQQGYPPPPYPAQGYPPPYAPQYAQPPPHQHNNNSSGPGCMEG 451
YPPQGYPPQGYP GYPPQ GYP YP QGYPPPYAPQY PPP QH S PG +EG
Sbjct: 27 YPPQGYPPQGYPQQGYPPQ-GYPQQGYPQQGYPPPYAPQY--PPPPQHQQQQSSPGFLEG 83
Query: 450 CLAALCCCCLLDACF 406
CLAALCCCCLLDACF
Sbjct: 84 CLAALCCCCLLDACF 98
Score = 32.0 bits (71), Expect = 7.0
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = +2
Query: 539 PCAGYGGGGYPCCGGYPGGGYP*GGYPCGGY 631
P GY GYP GYP GYP GYP GY
Sbjct: 28 PPQGYPPQGYPQ-QGYPPQGYPQQGYPQQGY 57
Score = 31.6 bits (70), Expect = 9.1
Identities = 18/37 (48%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +2
Query: 533 G*PCAGYGGGGYPCCG----GYPGGGYP*GGYPCGGY 631
G P GY YP G GYP GYP GYP GY
Sbjct: 16 GYPPEGYPKDAYPPQGYPPQGYPQQGYPPQGYPQQGY 52
>emb|CAA71756.1| hypothetical protein [Sporobolus stapfianus]
Length = 86
Score = 120 bits (301), Expect = 1e-26
Identities = 55/77 (71%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Frame = -1
Query: 633 GYPPQ-GYPPQGYPPPGYPPQQGYPPPPYPAQGYPPPYAPQYAQPPPHQHNNNSSGPGCM 457
GYP + GYPPQGYPP GYPPQQGYPP YP QGYPPPYA AQ SGP M
Sbjct: 17 GYPGKDGYPPQGYPPAGYPPQQGYPPQGYPQQGYPPPYAQAAAQ-------QQQSGPSFM 69
Query: 456 EGCLAALCCCCLLDACF 406
EGCLAALCCCCLLDACF
Sbjct: 70 EGCLAALCCCCLLDACF 86
Score = 33.9 bits (76), Expect = 1.8
Identities = 16/29 (55%), Positives = 16/29 (55%)
Frame = +2
Query: 533 G*PCAGYGGGGYPCCGGYPGGGYP*GGYP 619
G P GY GYP GYP GYP GYP
Sbjct: 23 GYPPQGYPPAGYPPQQGYPPQGYPQQGYP 51
>gb|AAM63525.1| unknown [Arabidopsis thaliana]
Length = 101
Score = 105 bits (262), Expect = 5e-22
Identities = 48/77 (62%), Positives = 51/77 (65%), Gaps = 2/77 (2%)
Frame = -1
Query: 630 YPPQG--YPPQGYPPPGYPPQQGYPPPPYPAQGYPPPYAPQYAQPPPHQHNNNSSGPGCM 457
YPP G YP QGYPPP PQQGYPP YP QGYP PQ PP Q S PG +
Sbjct: 26 YPPPGQPYPQQGYPPPQGYPQQGYPPQGYPPQGYPEQGYPQQGYPPQQQQQQKHS-PGML 84
Query: 456 EGCLAALCCCCLLDACF 406
EGC+AALCCCC+LDACF
Sbjct: 85 EGCIAALCCCCVLDACF 101
Score = 32.3 bits (72), Expect = 5.3
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +2
Query: 539 PCAGYGGGGYPCCGGYPGGGYP*GGYPCGGY 631
P Y GYP GYP GYP GYP GY
Sbjct: 29 PGQPYPQQGYPPPQGYPQQGYPPQGYPPQGY 59
Score = 32.0 bits (71), Expect = 7.0
Identities = 17/31 (54%), Positives = 17/31 (54%)
Frame = +2
Query: 539 PCAGYGGGGYPCCGGYPGGGYP*GGYPCGGY 631
P GY GYP GYP GYP GYP GY
Sbjct: 40 PPQGYPQQGYPP-QGYPPQGYPEQGYPQQGY 69
>ref|NP_569052.1| expressed protein; protein id: At5g67600.1, supported by cDNA:
9946., supported by cDNA: gi_14532793, supported by
cDNA: gi_21281248 [Arabidopsis thaliana]
gi|9757881|dbj|BAB08468.1| gene_id:K9I9.17~unknown
protein [Arabidopsis thaliana]
gi|14532794|gb|AAK64178.1| unknown protein [Arabidopsis
thaliana] gi|21281249|gb|AAM45062.1| unknown protein
[Arabidopsis thaliana]
Length = 82
Score = 104 bits (260), Expect = 8e-22
Identities = 52/79 (65%), Positives = 56/79 (70%), Gaps = 5/79 (6%)
Frame = -1
Query: 627 PPQGYPPQ-GYPPPGYPPQQGYPPPPY----PAQGYPPPYAPQYAQPPPHQHNNNSSGPG 463
PPQGYPP+ GYPP GYPP GYPPP Y PAQGYPPP QY+Q P + N G
Sbjct: 13 PPQGYPPKDGYPPAGYPPA-GYPPPGYAQGYPAQGYPPP---QYSQAPQQKQN-----AG 63
Query: 462 CMEGCLAALCCCCLLDACF 406
+EGCLAALCCCCLLDACF
Sbjct: 64 MLEGCLAALCCCCLLDACF 82
Score = 33.5 bits (75), Expect = 2.4
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +2
Query: 563 GYPCCGGYPGGGYP*GGYPCGGY 631
GYP GYP GYP GYP GY
Sbjct: 16 GYPPKDGYPPAGYPPAGYPPPGY 38
>ref|NP_190553.1| putative protein; protein id: At3g49840.1 [Arabidopsis thaliana]
gi|11358046|pir||T46050 hypothetical protein T16K5.190 -
Arabidopsis thaliana gi|6723429|emb|CAB66922.1| putative
protein [Arabidopsis thaliana]
Length = 651
Score = 100 bits (249), Expect = 2e-20
Identities = 52/102 (50%), Positives = 54/102 (51%), Gaps = 26/102 (25%)
Frame = -1
Query: 633 GYPPQGY-PPQGYPPPGYP----PQQGYPPPP------YPAQGYPPPYAPQ--------- 514
GYPP GY PP GYPPP YP P GYPPP YPAQGYPPP PQ
Sbjct: 550 GYPPAGYPPPAGYPPPQYPQAGYPPAGYPPPQQGYGQGYPAQGYPPPQYPQGHPPQYPYQ 609
Query: 513 ------YAQPPPHQHNNNSSGPGCMEGCLAALCCCCLLDACF 406
Y Q PP + G MEGCLA LCCC LL+ACF
Sbjct: 610 GPPPPHYGQAPPKNKKDKKDSGGFMEGCLAMLCCCVLLEACF 651
Score = 35.4 bits (80), Expect = 0.63
Identities = 16/31 (51%), Positives = 16/31 (51%)
Frame = +2
Query: 539 PCAGYGGGGYPCCGGYPGGGYP*GGYPCGGY 631
P GY GYP GYP YP GYP GY
Sbjct: 547 PKEGYPPAGYPPPAGYPPPQYPQAGYPPAGY 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,836,235
Number of Sequences: 1393205
Number of extensions: 16284828
Number of successful extensions: 214374
Number of sequences better than 10.0: 3946
Number of HSP's better than 10.0 without gapping: 69325
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146147
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
