Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004326A_C01 KMC004326A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564374.1| expressed protein; protein id: At1g31130.1, sup... 86 5e-16
ref|NP_193728.1| putative protein; protein id: At4g19950.1 [Arab... 82 7e-15
ref|NP_199299.1| putative protein; protein id: At5g44860.1, supp... 79 3e-14
dbj|BAB86411.1| P0003D09.5 [Oryza sativa (japonica cultivar-grou... 71 1e-11
ref|NP_028490.1| expressed protein; protein id: At2g18690.1, sup... 42 0.006
>ref|NP_564374.1| expressed protein; protein id: At1g31130.1, supported by cDNA:
151489., supported by cDNA: gi_13272450, supported by
cDNA: gi_19698822 [Arabidopsis thaliana]
gi|25513746|pir||H86436 F28K20.6 protein - Arabidopsis
thaliana gi|4512625|gb|AAD21694.1| ESTs gb|T20423,
gb|AA712864, gb|H76323 and gb|Z25560 come from this
gene. [Arabidopsis thaliana]
gi|13272451|gb|AAK17164.1|AF325096_1 unknown protein
[Arabidopsis thaliana] gi|19698823|gb|AAL91147.1|
unknown protein [Arabidopsis thaliana]
gi|21386969|gb|AAM47888.1| unknown protein [Arabidopsis
thaliana] gi|21553567|gb|AAM62660.1| unknown
[Arabidopsis thaliana]
Length = 321
Score = 85.5 bits (210), Expect = 5e-16
Identities = 52/125 (41%), Positives = 75/125 (59%), Gaps = 1/125 (0%)
Frame = -1
Query: 601 EDSYGFKAMMKSNELMKGKMGLSILIILTLNVPSFLIYLLFNKLVVQGL-RLGYVEKTAY 425
E YG AM K+ EL+KGK +++ +I LI ++F +VV G + G +T
Sbjct: 198 EPVYGIAAMRKAYELLKGKTKMAMGLIFVYLFLCGLIGVVFGAVVVHGGGKYGTFTRTLV 257
Query: 424 GILCLILLSHLILFGHVIHSVLYFVCKSYHHQNIDKSALSDHLEVYHGEYEPLKAQDVQL 245
G L + +L + L G ++ SV Y+VCKSYHHQ IDK+AL D L Y G+Y PLK+ ++QL
Sbjct: 258 GGLLVGVLVMVNLVGLLVQSVFYYVCKSYHHQTIDKTALYDQLGGYLGDYVPLKS-NIQL 316
Query: 244 EHYQV 230
E +
Sbjct: 317 EDLDI 321
>ref|NP_193728.1| putative protein; protein id: At4g19950.1 [Arabidopsis thaliana]
gi|7485737|pir||T04879 hypothetical protein F18F4.50 -
Arabidopsis thaliana gi|2827649|emb|CAA16603.1| putative
protein [Arabidopsis thaliana]
gi|7268790|emb|CAB78995.1| putative protein [Arabidopsis
thaliana]
Length = 306
Score = 81.6 bits (200), Expect = 7e-15
Identities = 51/124 (41%), Positives = 70/124 (56%)
Frame = -1
Query: 601 EDSYGFKAMMKSNELMKGKMGLSILIILTLNVPSFLIYLLFNKLVVQGLRLGYVEKTAYG 422
E YG AM KS EL+KGK ++ ++ V I +F +VV+G YG
Sbjct: 198 EPIYGLAAMKKSYELLKGKTLMACSMVFIYLVHCGFIAGVFGAVVVRG-------GDDYG 250
Query: 421 ILCLILLSHLILFGHVIHSVLYFVCKSYHHQNIDKSALSDHLEVYHGEYEPLKAQDVQLE 242
I I+ + SV Y+VCKS+HHQ IDKSAL DHL Y GEY PLK+ ++Q+E
Sbjct: 251 IFARIVAGGFL-------SVFYYVCKSFHHQEIDKSALHDHLGGYLGEYVPLKS-NIQME 302
Query: 241 HYQV 230
+++V
Sbjct: 303 NFEV 306
>ref|NP_199299.1| putative protein; protein id: At5g44860.1, supported by cDNA:
31042. [Arabidopsis thaliana] gi|2660664|gb|AAC79135.1|
unknown protein [Arabidopsis thaliana]
gi|10177476|dbj|BAB10867.1|
gb|AAC79135.1~gene_id:K21C13.3~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|21592663|gb|AAM64612.1| unknown [Arabidopsis
thaliana] gi|28392933|gb|AAO41902.1| unknown protein
[Arabidopsis thaliana] gi|28973591|gb|AAO64120.1|
unknown protein [Arabidopsis thaliana]
Length = 321
Score = 79.3 bits (194), Expect = 3e-14
Identities = 47/125 (37%), Positives = 70/125 (55%), Gaps = 1/125 (0%)
Frame = -1
Query: 601 EDSYGFKAMMKSNELMKGKMGLSILIILTLNVPSFLIYLLFNKLVVQGLR-LGYVEKTAY 425
E YG AM KS EL+ G+ ++ ++ + +F +VV G G K
Sbjct: 198 EPIYGIAAMKKSYELLNGRTNMACSMVFMYLALCGITAGVFGGVVVHGGDDFGLFTKIVV 257
Query: 424 GILCLILLSHLILFGHVIHSVLYFVCKSYHHQNIDKSALSDHLEVYHGEYEPLKAQDVQL 245
G + +L + L G ++ SV Y+VCKS+HHQ IDKSAL DHL Y G+Y PLK+ +Q+
Sbjct: 258 GGFLVGILVIVNLVGLLVQSVFYYVCKSFHHQPIDKSALHDHLGGYLGDYVPLKS-SIQM 316
Query: 244 EHYQV 230
E++ +
Sbjct: 317 ENFDI 321
>dbj|BAB86411.1| P0003D09.5 [Oryza sativa (japonica cultivar-group)]
gi|20804736|dbj|BAB92422.1| P0691E06.20 [Oryza sativa
(japonica cultivar-group)]
Length = 329
Score = 70.9 bits (172), Expect = 1e-11
Identities = 41/123 (33%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Frame = -1
Query: 589 GFKAMMKSNELMKGKMGLSILIILTLNVPSFLIYLLFNKLVVQG------LRLGYVEKTA 428
G AM KS +L++G+ + +++++ + +LF VV+G L L +
Sbjct: 205 GLAAMTKSKQLLQGRTRTAGVLVVSYFAACGVTAVLFRAAVVKGRGEEGSLGLSLPGRVL 264
Query: 427 YGILCLILLSHLILFGHVIHSVLYFVCKSYHHQNIDKSALSDHLEVYHGEYEPLKAQDVQ 248
G + + +L + L G ++ SV Y+ CK++H+Q ID+SAL +HL Y GEY PLK+ ++Q
Sbjct: 265 AGAVLVSVLVCVNLLGLLVQSVFYYACKAFHNQQIDRSALYEHLGGYLGEYVPLKS-NIQ 323
Query: 247 LEH 239
+E+
Sbjct: 324 MEN 326
>ref|NP_028490.1| expressed protein; protein id: At2g18690.1, supported by cDNA:
gi_14517479 [Arabidopsis thaliana]
gi|25370704|pir||D84567 hypothetical protein At2g18690
[imported] - Arabidopsis thaliana
gi|4185135|gb|AAD08938.1| expressed protein [Arabidopsis
thaliana]
Length = 322
Score = 42.0 bits (97), Expect = 0.006
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 1/95 (1%)
Frame = -1
Query: 601 EDSYGFKAMMKSNELMKG-KMGLSILIILTLNVPSFLIYLLFNKLVVQGLRLGYVEKTAY 425
E+SYGF+A+ K+ +++KG K L +L + + S L +L +L+ G L T +
Sbjct: 215 EESYGFQALGKAAKIVKGMKTKLFLLNLFFGLLASGLAQIL--QLINMGRSLAVTLTTGF 272
Query: 424 GILCLILLSHLILFGHVIHSVLYFVCKSYHHQNID 320
++CL+ + +F V ++V YF CKS ++++
Sbjct: 273 VLVCLVFA--VRMFQLVTYTVAYFQCKSLQGRDVE 305
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,239,342
Number of Sequences: 1393205
Number of extensions: 10312936
Number of successful extensions: 28597
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 27342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28509
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
