Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004325A_C01 KMC004325A_c01
(375 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P22067|ATP6_NAEFO ATP synthase A chain (Protein 6) gi|543551|... 31 4.4
ref|NP_200532.1| cytochrome p450 family; protein id: At5g57220.1... 31 4.4
gb|AAA31968.2| ATPase subunit 6 [Naegleria fowleri] 31 4.4
ref|NP_487229.1| beta-carotene ketolase [Nostoc sp. PCC 7120] gi... 30 9.8
>sp|P22067|ATP6_NAEFO ATP synthase A chain (Protein 6) gi|543551|pir||A53257
H+-transporting ATP synthase protein 6 homolog -
Naegleria fowleri mitochondrion (fragment)
Length = 119
Score = 30.8 bits (68), Expect = 4.4
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = -2
Query: 242 CLFSLL----FKF*VTIHILIPNSQFTLLIFWHSLLLKFIAAGVSVLCKFCILFYSQVIR 75
CL +L+ F F +T H+ I S + L++W + LL F +G++ + F + V+
Sbjct: 41 CLSNLVGIVPFSFTITSHLNITFS-LSFLVWWATCLLGFYESGLAFIAIFYVKGIPFVLV 99
Query: 74 LYWSILS*I*F 42
+W+++ I F
Sbjct: 100 PFWALIEVISF 110
>ref|NP_200532.1| cytochrome p450 family; protein id: At5g57220.1, supported by cDNA:
gi_17528949, supported by cDNA: gi_20465950 [Arabidopsis
thaliana] gi|8777355|dbj|BAA96945.1| cytochrome P450
[Arabidopsis thaliana] gi|17528950|gb|AAL38685.1|
putative cytochrome P450 protein [Arabidopsis thaliana]
gi|20465951|gb|AAM20161.1| putative cytochrome P450
protein [Arabidopsis thaliana]
Length = 491
Score = 30.8 bits (68), Expect = 4.4
Identities = 27/72 (37%), Positives = 31/72 (42%), Gaps = 5/72 (6%)
Frame = -1
Query: 219 ILSYHPHIDTQFAVYVAYFLALTTTEVYSS-----RGICSLQILYFILLTGDTFVLVDTF 55
IL+ PH T A YVAY T Y R ICSL+IL LTG V D
Sbjct: 94 ILTNRPHFLT--AKYVAYDYTTIGTAAYGDHWRNLRRICSLEILSSNRLTGFLSVRKDEI 151
Query: 54 INLI*LVDINYD 19
L+ + YD
Sbjct: 152 RRLLTKLSREYD 163
>gb|AAA31968.2| ATPase subunit 6 [Naegleria fowleri]
Length = 120
Score = 30.8 bits (68), Expect = 4.4
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = -2
Query: 242 CLFSLL----FKF*VTIHILIPNSQFTLLIFWHSLLLKFIAAGVSVLCKFCILFYSQVIR 75
CL +L+ F F +T H+ I S + L++W + LL F +G++ + F + V+
Sbjct: 41 CLSNLVGIVPFSFTITSHLNITFS-LSFLVWWATCLLGFYESGLAFIAIFYVKGIPFVLV 99
Query: 74 LYWSILS*I*F 42
+W+++ I F
Sbjct: 100 PFWALIEVISF 110
>ref|NP_487229.1| beta-carotene ketolase [Nostoc sp. PCC 7120]
gi|25533132|pir||AF2204 beta-carotene ketolase
[imported] - Nostoc sp. (strain PCC 7120)
gi|17132284|dbj|BAB74888.1| beta-carotene ketolase
[Nostoc sp. PCC 7120]
Length = 258
Score = 29.6 bits (65), Expect = 9.8
Identities = 18/48 (37%), Positives = 28/48 (57%), Gaps = 10/48 (20%)
Frame = +1
Query: 238 KQFYRSIQV---ILISH----VVHVPIASLIV*WLTPKIL---LLFYF 351
K ++R Q+ ++I H +VH+P +LI+ W+ P IL LFYF
Sbjct: 150 KSYWRWTQIFGLVMIFHGLKNLVHIPENNLIIFWMIPSILSSVQLFYF 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 305,571,670
Number of Sequences: 1393205
Number of extensions: 5734126
Number of successful extensions: 10947
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10945
length of database: 448,689,247
effective HSP length: 100
effective length of database: 309,368,747
effective search space used: 7424849928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
