Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004323A_C01 KMC004323A_c01
(734 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564034.1| expressed protein; protein id: At1g17745.1, sup... 169 4e-41
emb|CAC09348.1| putative phosphoglycerate dehydrogenase [Oryza s... 154 1e-36
dbj|BAB02473.1| phosphoglycerate dehydrogenase [Arabidopsis thal... 152 6e-36
gb|AAK68798.1| phosphoglycerate dehydrogenase [Arabidopsis thali... 152 6e-36
ref|NP_566637.1| putative D-3-phosphoglycerate dehydrogenase; pr... 152 6e-36
>ref|NP_564034.1| expressed protein; protein id: At1g17745.1, supported by cDNA:
20582., supported by cDNA: gi_15215739, supported by
cDNA: gi_20466082, supported by cDNA: gi_2189963
[Arabidopsis thaliana] gi|3122858|sp|O04130|SERA_ARATH
D-3-phosphoglycerate dehydrogenase, chloroplast
precursor (3-PGDH) gi|25283942|pir||T52296
phosphoglycerate dehydrogenase (EC 1.1.1.95) precursor
[validated] - Arabidopsis thaliana
gi|2189964|dbj|BAA20405.1| Phosphoglycerate
dehydrogenase [Arabidopsis thaliana]
gi|2804258|dbj|BAA24440.1| phosphoglycerate
dehydrogenase [Arabidopsis thaliana]
gi|9802747|gb|AAF99816.1|AC034257_8 D-3-phosphoglycerate
dehydrogenase [Arabidopsis thaliana]
gi|15215740|gb|AAK91415.1| At1g17740/F11A6_16
[Arabidopsis thaliana] gi|20466083|gb|AAM19963.1|
At1g17740/F11A6_16 [Arabidopsis thaliana]
gi|21554130|gb|AAM63210.1| Phosphoglycerate
dehydrogenase-like protein [Arabidopsis thaliana]
Length = 624
Score = 169 bits (428), Expect = 4e-41
Identities = 85/100 (85%), Positives = 90/100 (90%)
Frame = -1
Query: 734 IEGKVKFGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGSVGNILGERNVNVSFMSVG 555
IEGKVK+GVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIG VGNILGE+NVNV+FMSVG
Sbjct: 525 IEGKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVG 584
Query: 554 RTSRGKKAIMAIGVDEEPGKEALETIGAVPAIEEFVFLKL 435
RT K+AIMAIGVDEEP + LE IG V AIEEFVFLKL
Sbjct: 585 RTVLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624
>emb|CAC09348.1| putative phosphoglycerate dehydrogenase [Oryza sativa (indica
cultivar-group)]
Length = 398
Score = 154 bits (389), Expect = 1e-36
Identities = 77/100 (77%), Positives = 86/100 (86%)
Frame = -1
Query: 734 IEGKVKFGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGSVGNILGERNVNVSFMSVG 555
+EGKVK G+PHLT VGSF VDVSLEG+LILCRQVDQPGMIG+VG++LGE NVNVSFMSVG
Sbjct: 299 VEGKVKDGIPHLTKVGSFQVDVSLEGSLILCRQVDQPGMIGAVGSVLGEENVNVSFMSVG 358
Query: 554 RTSRGKKAIMAIGVDEEPGKEALETIGAVPAIEEFVFLKL 435
R + K A+MAIGVDEEP K L IG +PAIEEFVFLKL
Sbjct: 359 RIAPRKHAVMAIGVDEEPKKSTLTKIGEIPAIEEFVFLKL 398
>dbj|BAB02473.1| phosphoglycerate dehydrogenase [Arabidopsis thaliana]
Length = 588
Score = 152 bits (383), Expect = 6e-36
Identities = 75/100 (75%), Positives = 87/100 (87%)
Frame = -1
Query: 734 IEGKVKFGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGSVGNILGERNVNVSFMSVG 555
+EG+VK GVP LT VG FGVDVSLEG++ILCRQVDQPGMIG V +ILG+ NVNVSFMSVG
Sbjct: 489 VEGRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQPGMIGKVASILGDENVNVSFMSVG 548
Query: 554 RTSRGKKAIMAIGVDEEPGKEALETIGAVPAIEEFVFLKL 435
R + GK+A+MAIGVDE+P KE L+ IG +PAIEEFVFLKL
Sbjct: 549 RIAPGKQAVMAIGVDEQPSKETLKKIGDIPAIEEFVFLKL 588
>gb|AAK68798.1| phosphoglycerate dehydrogenase [Arabidopsis thaliana]
Length = 516
Score = 152 bits (383), Expect = 6e-36
Identities = 75/100 (75%), Positives = 87/100 (87%)
Frame = -1
Query: 734 IEGKVKFGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGSVGNILGERNVNVSFMSVG 555
+EG+VK GVP LT VG FGVDVSLEG++ILCRQVDQPGMIG V +ILG+ NVNVSFMSVG
Sbjct: 417 VEGRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQPGMIGKVASILGDENVNVSFMSVG 476
Query: 554 RTSRGKKAIMAIGVDEEPGKEALETIGAVPAIEEFVFLKL 435
R + GK+A+MAIGVDE+P KE L+ IG +PAIEEFVFLKL
Sbjct: 477 RIAPGKQAVMAIGVDEQPSKETLKKIGDIPAIEEFVFLKL 516
>ref|NP_566637.1| putative D-3-phosphoglycerate dehydrogenase; protein id:
At3g19480.1 [Arabidopsis thaliana]
Length = 432
Score = 152 bits (383), Expect = 6e-36
Identities = 75/100 (75%), Positives = 87/100 (87%)
Frame = -1
Query: 734 IEGKVKFGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGSVGNILGERNVNVSFMSVG 555
+EG+VK GVP LT VG FGVDVSLEG++ILCRQVDQPGMIG V +ILG+ NVNVSFMSVG
Sbjct: 333 VEGRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQPGMIGKVASILGDENVNVSFMSVG 392
Query: 554 RTSRGKKAIMAIGVDEEPGKEALETIGAVPAIEEFVFLKL 435
R + GK+A+MAIGVDE+P KE L+ IG +PAIEEFVFLKL
Sbjct: 393 RIAPGKQAVMAIGVDEQPSKETLKKIGDIPAIEEFVFLKL 432
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 637,684,880
Number of Sequences: 1393205
Number of extensions: 13548776
Number of successful extensions: 34831
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 33480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34816
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
