Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004322A_C01 KMC004322A_c01
(734 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563892.1| xyloglucan endotransglycosylase, putative; prot... 280 2e-74
gb|AAM66078.1| endo-xyloglucan transferase, putative [Arabidopsi... 280 2e-74
pir||G86248 protein T23J18.21 [imported] - Arabidopsis thaliana ... 264 9e-70
dbj|BAC45142.1| putative xyloglucan endotransglycosylase [Oryza ... 209 3e-53
ref|NP_196891.1| xyloglucan endotransglycosylase (EXGT-A4); prot... 164 2e-39
>ref|NP_563892.1| xyloglucan endotransglycosylase, putative; protein id: At1g11545.1,
supported by cDNA: 7729. [Arabidopsis thaliana]
Length = 305
Score = 280 bits (715), Expect = 2e-74
Identities = 121/150 (80%), Positives = 139/150 (92%), Gaps = 2/150 (1%)
Frame = -2
Query: 733 DYHTYSVLWNNHQIVFFVDKVPIRVFKNNGK-PNN-FFPNEKPMFLFSSIWNADDWATRG 560
DYHTYS+LWNNHQ+VFFVD+VPIRV+KN+ K PNN FFPN+KPM+LFSSIWNADDWATRG
Sbjct: 156 DYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRG 215
Query: 559 GLEKTNWKLAPFVSSYKDFSVDACQWEDPFPACVSTTTKYWWDQYNAWHLSDDQKTDYAW 380
GLEKT+WK APFVSSYKDF+V+ C+W+DPFPACVSTTT+ WWDQY+AWHLS QK DYAW
Sbjct: 216 GLEKTDWKKAPFVSSYKDFAVEGCRWKDPFPACVSTTTENWWDQYDAWHLSKTQKMDYAW 275
Query: 379 VQRNLVIYDYCKDTERFTTMPEECSLSPWA 290
VQRNLV+YDYCKD+ERF T+P ECS+SPWA
Sbjct: 276 VQRNLVVYDYCKDSERFPTLPWECSISPWA 305
>gb|AAM66078.1| endo-xyloglucan transferase, putative [Arabidopsis thaliana]
Length = 292
Score = 280 bits (715), Expect = 2e-74
Identities = 121/150 (80%), Positives = 139/150 (92%), Gaps = 2/150 (1%)
Frame = -2
Query: 733 DYHTYSVLWNNHQIVFFVDKVPIRVFKNNGK-PNN-FFPNEKPMFLFSSIWNADDWATRG 560
DYHTYS+LWNNHQ+VFFVD+VPIRV+KN+ K PNN FFPN+KPM+LFSSIWNADDWATRG
Sbjct: 143 DYHTYSILWNNHQLVFFVDRVPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRG 202
Query: 559 GLEKTNWKLAPFVSSYKDFSVDACQWEDPFPACVSTTTKYWWDQYNAWHLSDDQKTDYAW 380
GLEKT+WK APFVSSYKDF+V+ C+W+DPFPACVSTTT+ WWDQY+AWHLS QK DYAW
Sbjct: 203 GLEKTDWKKAPFVSSYKDFAVEGCRWKDPFPACVSTTTENWWDQYDAWHLSKTQKMDYAW 262
Query: 379 VQRNLVIYDYCKDTERFTTMPEECSLSPWA 290
VQRNLV+YDYCKD+ERF T+P ECS+SPWA
Sbjct: 263 VQRNLVVYDYCKDSERFPTLPWECSISPWA 292
>pir||G86248 protein T23J18.21 [imported] - Arabidopsis thaliana
gi|6554196|gb|AAF16642.1|AC011661_20 T23J18.21
[Arabidopsis thaliana]
Length = 304
Score = 264 bits (675), Expect = 9e-70
Identities = 117/150 (78%), Positives = 134/150 (89%), Gaps = 2/150 (1%)
Frame = -2
Query: 733 DYHTYSVLWNNHQIVFFVDKVPIRVFKNNGK-PNN-FFPNEKPMFLFSSIWNADDWATRG 560
DYHTYS+LWNNHQ+V VPIRV+KN+ K PNN FFPN+KPM+LFSSIWNADDWATRG
Sbjct: 160 DYHTYSILWNNHQLV-----VPIRVYKNSDKVPNNDFFPNQKPMYLFSSIWNADDWATRG 214
Query: 559 GLEKTNWKLAPFVSSYKDFSVDACQWEDPFPACVSTTTKYWWDQYNAWHLSDDQKTDYAW 380
GLEKT+WK APFVSSYKDF+V+ C+W+DPFPACVSTTT+ WWDQY+AWHLS QK DYAW
Sbjct: 215 GLEKTDWKKAPFVSSYKDFAVEGCRWKDPFPACVSTTTENWWDQYDAWHLSKTQKMDYAW 274
Query: 379 VQRNLVIYDYCKDTERFTTMPEECSLSPWA 290
VQRNLV+YDYCKD+ERF T+P ECS+SPWA
Sbjct: 275 VQRNLVVYDYCKDSERFPTLPWECSISPWA 304
>dbj|BAC45142.1| putative xyloglucan endotransglycosylase [Oryza sativa (japonica
cultivar-group)]
Length = 309
Score = 209 bits (532), Expect = 3e-53
Identities = 93/147 (63%), Positives = 111/147 (75%), Gaps = 3/147 (2%)
Frame = -2
Query: 733 DYHTYSVLWNNHQIVFFVDKVPIRVFKNNGKPNNFFPNEKPMFLFSSIWNADDWATRGGL 554
D+H+YS+LWN QIVFFVDKVPIR ++N+ KPN FFP KPM++FSSIWNADDWATRGGL
Sbjct: 158 DFHSYSILWNPKQIVFFVDKVPIREYRNSDKPNTFFPIMKPMYVFSSIWNADDWATRGGL 217
Query: 553 EKTNWKLAPFVSSYKDFSVDACQWEDPF---PACVSTTTKYWWDQYNAWHLSDDQKTDYA 383
EKT+W APF+SSY+DF+ DAC W P+C ++T WWDQ AW L Q+ D A
Sbjct: 218 EKTDWTKAPFISSYRDFTADACSWGTAAASPPSCAASTGNSWWDQPPAWALDAGQREDSA 277
Query: 382 WVQRNLVIYDYCKDTERFTTMPEECSL 302
WV RNLVIYDYC D +RF + PEEC L
Sbjct: 278 WVARNLVIYDYCDDRKRFPSPPEECLL 304
>ref|NP_196891.1| xyloglucan endotransglycosylase (EXGT-A4); protein id: At5g13870.1
[Arabidopsis thaliana] gi|5139002|dbj|BAA81669.1|
endoxyloglucan transferase [Arabidopsis thaliana]
gi|5533315|gb|AAD45126.1|AF163822_1 endoxyloglucan
transferase [Arabidopsis thaliana]
gi|10177653|dbj|BAB11115.1| endoxyloglucan transferase
[Arabidopsis thaliana]
Length = 293
Score = 164 bits (414), Expect = 2e-39
Identities = 78/142 (54%), Positives = 93/142 (64%)
Frame = -2
Query: 733 DYHTYSVLWNNHQIVFFVDKVPIRVFKNNGKPNNFFPNEKPMFLFSSIWNADDWATRGGL 554
DYH+YSVLWN +QIVFFVD VPIRVFKN+ FP +PM ++SS+WNADDWATRGGL
Sbjct: 147 DYHSYSVLWNMYQIVFFVDDVPIRVFKNSKDVGVKFPFNQPMKIYSSLWNADDWATRGGL 206
Query: 553 EKTNWKLAPFVSSYKDFSVDACQWEDPFPACVSTTTKYWWDQYNAWHLSDDQKTDYAWVQ 374
EKTNW+ APFV+SY+ F VD C+ C T K WWDQ L +Q WV+
Sbjct: 207 EKTNWEKAPFVASYRGFHVDGCEASVNAKFC-ETQGKRWWDQKEFQDLDANQYKRLKWVR 265
Query: 373 RNLVIYDYCKDTERFTTMPEEC 308
+ IY+YC D RF P EC
Sbjct: 266 KRYTIYNYCTDRVRFPVPPPEC 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 663,921,048
Number of Sequences: 1393205
Number of extensions: 15317855
Number of successful extensions: 35320
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 33860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35157
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
