Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004319A_C01 KMC004319A_c01
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO37215.1| hypothetical protein [Arabidopsis thaliana] 125 3e-28
gb|AAO37217.1| hypothetical protein [Arabidopsis thaliana] 108 7e-23
ref|NP_671954.1| RRM-containing RNA-binding protein; protein id:... 97 1e-19
dbj|BAC42069.1| unknown protein [Arabidopsis thaliana] 94 2e-18
dbj|BAB01919.1| emb|CAA64867.1~gene_id:MMM17.12~similar to unkno... 86 4e-16
>gb|AAO37215.1| hypothetical protein [Arabidopsis thaliana]
Length = 277
Score = 125 bits (315), Expect = 3e-28
Identities = 60/85 (70%), Positives = 73/85 (85%)
Frame = -3
Query: 610 TLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSADALNNLQGT 431
TLF+AN+GP+C E ELIQVFSR GFLKLK+Q TYG PVAFVDFQDV S++AL+ LQGT
Sbjct: 191 TLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGT 250
Query: 430 ILHSSPAGEGMRLEFAKSRMGMRKK 356
+L+SS GE +RL++A+SRMGMRKK
Sbjct: 251 VLYSSLTGEVLRLQYARSRMGMRKK 275
Score = 39.7 bits (91), Expect = 0.032
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = -3
Query: 610 TLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGA-PVAFVDFQDVGSSADALNNLQG 434
TLFVA L +E+ +F +PG+ ++S+ GA P AF F D+ S+ ++ L G
Sbjct: 36 TLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
Query: 433 TIL----HSSPAGEGMRLEFAKS 377
+ HS+ + ++ AKS
Sbjct: 96 MVFDLEKHST-----LHIDLAKS 113
>gb|AAO37217.1| hypothetical protein [Arabidopsis thaliana]
Length = 287
Score = 108 bits (269), Expect = 7e-23
Identities = 51/75 (68%), Positives = 63/75 (84%)
Frame = -3
Query: 610 TLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSADALNNLQGT 431
TLF+AN+GP+C E ELIQVFSR GFLKLK+Q TYG PVAFVDFQDV S++AL+ LQGT
Sbjct: 191 TLFIANMGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGT 250
Query: 430 ILHSSPAGEGMRLEF 386
+L+SS GE +RL++
Sbjct: 251 VLYSSLTGEVLRLQY 265
Score = 39.7 bits (91), Expect = 0.032
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Frame = -3
Query: 610 TLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGA-PVAFVDFQDVGSSADALNNLQG 434
TLFVA L +E+ +F +PG+ ++S+ GA P AF F D+ S+ ++ L G
Sbjct: 36 TLFVAGLPEDVKPREIYNLFREFPGYETSHLRSSDGAKPFAFAVFSDLQSAVAVMHALNG 95
Query: 433 TIL----HSSPAGEGMRLEFAKS 377
+ HS+ + ++ AKS
Sbjct: 96 MVFDLEKHST-----LHIDLAKS 113
>ref|NP_671954.1| RRM-containing RNA-binding protein; protein id: At2g42245.1
[Arabidopsis thaliana]
Length = 91
Score = 97.4 bits (241), Expect = 1e-19
Identities = 46/69 (66%), Positives = 57/69 (81%)
Frame = -3
Query: 592 LGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSADALNNLQGTILHSSP 413
+GP+C E ELIQVFSR GFLKLK+Q TYG PVAFVDFQDV S++AL+ LQGT+L+SS
Sbjct: 1 MGPNCTEAELIQVFSRCRGFLKLKIQGTYGTPVAFVDFQDVSCSSEALHTLQGTVLYSSL 60
Query: 412 AGEGMRLEF 386
GE +RL++
Sbjct: 61 TGEVLRLQY 69
>dbj|BAC42069.1| unknown protein [Arabidopsis thaliana]
Length = 287
Score = 93.6 bits (231), Expect = 2e-18
Identities = 44/81 (54%), Positives = 62/81 (76%)
Frame = -3
Query: 613 ATLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSADALNNLQG 434
+TLF+ANLGP+C E EL Q+ SRYPGF LK+++ G PVAF DF+++ + DA+N+LQG
Sbjct: 205 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 264
Query: 433 TILHSSPAGEGMRLEFAKSRM 371
+L SS G GM +E+A+S+M
Sbjct: 265 NLLSSSDRG-GMHIEYARSKM 284
>dbj|BAB01919.1| emb|CAA64867.1~gene_id:MMM17.12~similar to unknown protein
[Arabidopsis thaliana]
Length = 271
Score = 85.9 bits (211), Expect = 4e-16
Identities = 40/76 (52%), Positives = 57/76 (74%)
Frame = -3
Query: 613 ATLFVANLGPSCNEQELIQVFSRYPGFLKLKMQSTYGAPVAFVDFQDVGSSADALNNLQG 434
+TLF+ANLGP+C E EL Q+ SRYPGF LK+++ G PVAF DF+++ + DA+N+LQG
Sbjct: 180 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQG 239
Query: 433 TILHSSPAGEGMRLEF 386
+L SS G GM +++
Sbjct: 240 NLLSSSDRG-GMHIDY 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,011,574
Number of Sequences: 1393205
Number of extensions: 10802080
Number of successful extensions: 24564
Number of sequences better than 10.0: 286
Number of HSP's better than 10.0 without gapping: 23598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24502
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
