Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004318A_C01 KMC004318A_c01
(631 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199062.1| brain and reproductive organ-expressed protein-... 163 2e-39
gb|AAA64186.1| Hin-3 [Homo sapiens] 58 9e-08
gb|AAN15148.1| brain and reproductive organ-expressed protein is... 57 3e-07
gb|AAL40811.1|AF440754_1 brain and reproductive organ-expressed ... 57 3e-07
ref|NP_653124.1| RIKEN cDNA 6030405P19 [Mus musculus] gi|1753032... 57 3e-07
>ref|NP_199062.1| brain and reproductive organ-expressed protein-like; protein id:
At5g42470.1 [Arabidopsis thaliana]
gi|9759483|dbj|BAB10488.1| brain and reproductive
organ-expressed protein-like [Arabidopsis thaliana]
Length = 351
Score = 163 bits (412), Expect = 2e-39
Identities = 74/114 (64%), Positives = 89/114 (77%)
Frame = -2
Query: 630 DVRRRFIEALAGPLGRPLEADPVFCRKATFLCTSGAFTFLAHFLIPTQFPKQQPTIMLQS 451
D+RR FIEAL+ LGRPLEADP FCRKATFL SG FTF+ HF TQFPKQQPT+MLQS
Sbjct: 236 DLRRSFIEALSLNLGRPLEADPTFCRKATFLNASGQFTFMVHFFFSTQFPKQQPTLMLQS 295
Query: 450 SQHFNSQTTPIKSRLISDYPWSPRWEPSLMAERIGEFLADESLNFKRQCSEGQL 289
QH N + P+KS L+++YPWSPRWE MAER+ +FL DE++NFK+ C+E L
Sbjct: 296 CQHLNQSSVPVKSNLLTEYPWSPRWEVGRMAERLCDFLTDEAVNFKKYCNEALL 349
>gb|AAA64186.1| Hin-3 [Homo sapiens]
Length = 277
Score = 58.2 bits (139), Expect = 9e-08
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Frame = -2
Query: 624 RRRFIEALAGPLGRPL-EADPVFCRKATFLCTSGAFTFLAHFLIPTQFPKQQPTIMLQSS 448
RR +I A G + E D K T L F FL H +P FP+ QPT+ QS
Sbjct: 133 RREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSV 192
Query: 447 QHFNSQTTPIKSRLISDYPWSPRWEPSLMAER 352
HF + + + S+ +YP+SPRW+ + MAER
Sbjct: 193 YHF-TNSGQLYSQAQKNYPYSPRWDGNEMAER 223
>gb|AAN15148.1| brain and reproductive organ-expressed protein isoform IV [Mus
musculus]
Length = 374
Score = 56.6 bits (135), Expect = 3e-07
Identities = 34/92 (36%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = -2
Query: 624 RRRFIEALAGPLGRPL-EADPVFCRKATFLCTSGAFTFLAHFLIPTQFPKQQPTIMLQSS 448
RR +I A G + E D K T L F FL H +P FP+ QPT+ QS
Sbjct: 262 RREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSV 321
Query: 447 QHFNSQTTPIKSRLISDYPWSPRWEPSLMAER 352
HF + + + S+ +YP+SPRW+ + MA+R
Sbjct: 322 YHF-TNSGQLYSQAQKNYPYSPRWDGNEMAKR 352
>gb|AAL40811.1|AF440754_1 brain and reproductive organ-expressed protein [Cercopithecus
aethiops]
Length = 383
Score = 56.6 bits (135), Expect = 3e-07
Identities = 34/92 (36%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = -2
Query: 624 RRRFIEALAGPLGRPL-EADPVFCRKATFLCTSGAFTFLAHFLIPTQFPKQQPTIMLQSS 448
RR +I A G + E D K T L F FL H +P FP+ QPT+ QS
Sbjct: 271 RREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSV 330
Query: 447 QHFNSQTTPIKSRLISDYPWSPRWEPSLMAER 352
HF + + + S+ +YP+SPRW+ + MA+R
Sbjct: 331 YHF-TNSGQLYSQAQKNYPYSPRWDGNEMAKR 361
>ref|NP_653124.1| RIKEN cDNA 6030405P19 [Mus musculus]
gi|17530323|gb|AAL40809.1|AF440752_1 brain and
reproductive organ-expressed protein [Mus musculus]
gi|26348937|dbj|BAC38108.1| unnamed protein product [Mus
musculus]
Length = 383
Score = 56.6 bits (135), Expect = 3e-07
Identities = 34/92 (36%), Positives = 48/92 (51%), Gaps = 1/92 (1%)
Frame = -2
Query: 624 RRRFIEALAGPLGRPL-EADPVFCRKATFLCTSGAFTFLAHFLIPTQFPKQQPTIMLQSS 448
RR +I A G + E D K T L F FL H +P FP+ QPT+ QS
Sbjct: 271 RREYIAAFLSHFGTGVVEYDAEGFTKLTLLLMWKDFCFLVHIDLPLFFPRDQPTLTFQSV 330
Query: 447 QHFNSQTTPIKSRLISDYPWSPRWEPSLMAER 352
HF + + + S+ +YP+SPRW+ + MA+R
Sbjct: 331 YHF-TNSGQLYSQAQKNYPYSPRWDGNEMAKR 361
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 511,961,995
Number of Sequences: 1393205
Number of extensions: 10266733
Number of successful extensions: 25473
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24901
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25459
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
