Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004316A_C01 KMC004316A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC24802.1| olfactory receptor [Sus scrofa] 33 2.6
ref|XP_171582.1| similar to olfactory receptor MOR111-1 [Mus mus... 32 4.4
gb|AAF90111.1|AF254362_1 stretchin-MLCK [Drosophila melanogaster] 32 5.8
ref|NP_725506.1| Stretchin-Mlck CG18255-PA gi|21645317|gb|AAM709... 32 5.8
ref|NP_725507.1| Stretchin-Mlck CG18255-PC gi|21645318|gb|AAM709... 32 5.8
>gb|AAC24802.1| olfactory receptor [Sus scrofa]
Length = 176
Score = 33.1 bits (74), Expect = 2.6
Identities = 25/64 (39%), Positives = 28/64 (43%)
Frame = -1
Query: 252 RLCCLFTLAGCS*RMLCFIAL*SSYDQYHCRSWNWYLLVCFMDVSAGLRVCIPCQGLRLL 73
R CCL L F++L S Q H SW L CF DV C P Q L+L
Sbjct: 24 RFCCLLVLVSF------FVSLLES--QVH--SWIALQLTCFKDVEISNFFCDPSQLLKLA 73
Query: 72 TSDT 61
SDT
Sbjct: 74 CSDT 77
>ref|XP_171582.1| similar to olfactory receptor MOR111-1 [Mus musculus] [Homo
sapiens]
Length = 312
Score = 32.3 bits (72), Expect = 4.4
Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 2/80 (2%)
Frame = -1
Query: 579 YWRHV-ICDDLTIIASNAPLMASRVVIMLIFNSMSRQEILIEFLCAATFAVTV*EDHYA- 406
Y R+V IC L ++ +M RV +L+F S L+ FL + + + HY
Sbjct: 118 YDRYVAICKPLHCLS----IMNRRVCTLLVFTSW-----LVSFLIIFPALMLLLKLHYCR 168
Query: 405 TTLIYGFPCDVFPIFILACT 346
+ +I F CD FP+ LAC+
Sbjct: 169 SNIIDHFTCDYFPLLQLACS 188
>gb|AAF90111.1|AF254362_1 stretchin-MLCK [Drosophila melanogaster]
Length = 201
Score = 32.0 bits (71), Expect = 5.8
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 294 CKLLLFKPGGKNGQVFTM 347
CKLL++KPG K+G ++TM
Sbjct: 94 CKLLIYKPGNKDGGIYTM 111
>ref|NP_725506.1| Stretchin-Mlck CG18255-PA gi|21645317|gb|AAM70936.1| CG18255-PA
[Drosophila melanogaster]
Length = 9270
Score = 32.0 bits (71), Expect = 5.8
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 294 CKLLLFKPGGKNGQVFTM 347
CKLL++KPG K+G ++TM
Sbjct: 5417 CKLLIYKPGNKDGGIYTM 5434
>ref|NP_725507.1| Stretchin-Mlck CG18255-PC gi|21645318|gb|AAM70937.1| CG18255-PC
[Drosophila melanogaster]
Length = 4463
Score = 32.0 bits (71), Expect = 5.8
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = +3
Query: 294 CKLLLFKPGGKNGQVFTM 347
CKLL++KPG K+G ++TM
Sbjct: 610 CKLLIYKPGNKDGGIYTM 627
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,864,920
Number of Sequences: 1393205
Number of extensions: 9930518
Number of successful extensions: 22033
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22026
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
