Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004314A_C01 KMC004314A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD43962.1|U78762_1 receptor-like kinase ARK1AS [Triticum aes... 33 1.4
ref|NP_085416.1| F pilin acetylation protein [Shigella flexneri]... 31 7.1
gb|AAL72299.1| TraX [Shigella flexneri 2a] 31 7.1
gb|AAD44031.1| receptor-like kinase [Hordeum vulgare] 31 7.1
gb|AAO49549.1| TraX [Escherichia coli] 31 7.1
>gb|AAD43962.1|U78762_1 receptor-like kinase ARK1AS [Triticum aestivum]
Length = 726
Score = 33.5 bits (75), Expect = 1.4
Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Frame = +3
Query: 330 YVRVQRH*R-CPNSCS--IGN*TSRCPVPC*TSKQSHILIWLKVLQDTADDITPY 485
Y+ Q + R C +CS + N ++ PV C ++K SH+ +W+ DD+ PY
Sbjct: 138 YLATQSYNRACFANCSRAVTNKSAYKPVACLSAKNSHVYVWVSDFLCMVDDLEPY 192
>ref|NP_085416.1| F pilin acetylation protein [Shigella flexneri]
gi|13310748|gb|AAK18572.1|AF348706_261 F pilin
acetylation protein [Shigella flexneri]
Length = 301
Score = 31.2 bits (69), Expect = 7.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 479 RDIICSIL*HLEPYEDVRLL*GLAWNW---TSRCSIPN*ATVWTSSMSLHPHVEDLVMGR 309
RDII ++ L + + L+ L W R + P A VW ++S H H+ + R
Sbjct: 86 RDIIKTVALVLMVLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINR 145
Query: 308 CWVFSFASPF 279
W + + F
Sbjct: 146 LWGWGIIAQF 155
>gb|AAL72299.1| TraX [Shigella flexneri 2a]
Length = 267
Score = 31.2 bits (69), Expect = 7.1
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 479 RDIICSIL*HLEPYEDVRLL*GLAWNW---TSRCSIPN*ATVWTSSMSLHPHVEDLVMGR 309
RDII ++ L + + L+ L W R + P A VW ++S H H+ + R
Sbjct: 52 RDIIKTVALVLMVLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINR 111
Query: 308 CWVFSFASPF 279
W + + F
Sbjct: 112 LWGWGIIAQF 121
>gb|AAD44031.1| receptor-like kinase [Hordeum vulgare]
Length = 675
Score = 31.2 bits (69), Expect = 7.1
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = +3
Query: 294 GKNPASPHN*VFYVRVQRH*RCPNSCS--IGN*TSRCPVPC*TSKQSHILIWLKVLQDTA 467
G N SP ++ V C +CS + + +S PV C ++ SH+ +W
Sbjct: 125 GINSVSPPGFLYLVSQSYDIACFANCSQAVTDSSSYKPVSCLSANNSHVYVWXSHYSCVV 184
Query: 468 DDITPY 485
+D PY
Sbjct: 185 EDFEPY 190
>gb|AAO49549.1| TraX [Escherichia coli]
Length = 248
Score = 31.2 bits (69), Expect = 7.1
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = -2
Query: 479 RDIICSIL*HLEPYEDVRLL*GLAWNW---TSRCSIPN*ATVWTSSMSLHPHVEDLVMGR 309
RDII ++ L + + L +W R + P A VW ++S H H+ L + R
Sbjct: 33 RDIIKTVALVLMVLDHANRILHLDQSWMFLAGRGAFPLFALVWGLNLSRHAHIRQLAINR 92
Query: 308 CWVFSFASPF 279
W ++ S F
Sbjct: 93 LWGWAVFSQF 102
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,277,422
Number of Sequences: 1393205
Number of extensions: 9075933
Number of successful extensions: 18429
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18424
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
