Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004313A_C01 KMC004313A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF98554.1|AF153441_1 serine threonine kinase homolog COK-4 [... 88 8e-17
ref|NP_198220.1| receptor-like protein kinase precursor - like; ... 53 2e-06
dbj|BAA87852.1| unnamed protein product [Oryza sativa (japonica ... 53 3e-06
dbj|BAB56062.1| putative receptor-protein kinase [Oryza sativa (... 50 1e-05
ref|NP_187120.1| putative protein kinase; protein id: At3g04690.... 50 2e-05
>gb|AAF98554.1|AF153441_1 serine threonine kinase homolog COK-4 [Phaseolus vulgaris]
Length = 369
Score = 87.8 bits (216), Expect = 8e-17
Identities = 37/70 (52%), Positives = 56/70 (79%)
Frame = -1
Query: 441 EHIDPALVGNIAPECYAVYIDIIDRCLKHEPDERPTMGEVEIQLEHALTLQQEADARDTS 262
E IDP + G IAP+C+ V++D++ CLK+EPDERPT+GEVE+QLEHAL++Q+++D +++
Sbjct: 291 ERIDPIIKGKIAPDCWQVFVDMMVSCLKYEPDERPTIGEVEVQLEHALSMQEQSDITNSN 350
Query: 261 DDYLSLFITI 232
+Y L TI
Sbjct: 351 SEYTLLSKTI 360
>ref|NP_198220.1| receptor-like protein kinase precursor - like; protein id:
At5g28680.1 [Arabidopsis thaliana]
Length = 858
Score = 53.1 bits (126), Expect = 2e-06
Identities = 31/80 (38%), Positives = 45/80 (55%), Gaps = 4/80 (5%)
Frame = -1
Query: 504 NGSESSDRITMHFYIMSRLRT----EHIDPALVGNIAPECYAVYIDIIDRCLKHEPDERP 337
N S S +++++ + M+ R + IDP L G I PEC + D ++CL +RP
Sbjct: 723 NPSLSKEQVSLGDWAMNCKRKGTLEDIIDPNLKGKINPECLKKFADTAEKCLSDSGLDRP 782
Query: 336 TMGEVEIQLEHALTLQQEAD 277
TMG+V LE AL LQ+ AD
Sbjct: 783 TMGDVLWNLEFALQLQETAD 802
>dbj|BAA87852.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|7106536|dbj|BAA92221.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 898
Score = 52.8 bits (125), Expect = 3e-06
Identities = 25/54 (46%), Positives = 32/54 (58%)
Frame = -1
Query: 435 IDPALVGNIAPECYAVYIDIIDRCLKHEPDERPTMGEVEIQLEHALTLQQEADA 274
+DPA+ IAPEC A + D ++CL ERPTMG+V LE A+ Q DA
Sbjct: 777 VDPAIRDQIAPECLAKFADTAEKCLSENGTERPTMGDVLWNLESAMHFQDAFDA 830
>dbj|BAB56062.1| putative receptor-protein kinase [Oryza sativa (japonica
cultivar-group)] gi|21743317|dbj|BAC03312.1| putative
receptor-protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 896
Score = 50.4 bits (119), Expect = 1e-05
Identities = 21/53 (39%), Positives = 35/53 (65%)
Frame = -1
Query: 435 IDPALVGNIAPECYAVYIDIIDRCLKHEPDERPTMGEVEIQLEHALTLQQEAD 277
+DP L G IAP+C+ + + ++C+ E +RP+MG+V LE AL +Q+ A+
Sbjct: 773 VDPHLKGKIAPQCFKKFAETAEKCVSDEGIDRPSMGDVLWNLEFALQMQESAE 825
>ref|NP_187120.1| putative protein kinase; protein id: At3g04690.1 [Arabidopsis
thaliana] gi|6175184|gb|AAF04910.1|AC011437_25 putative
protein kinase [Arabidopsis thaliana]
Length = 850
Score = 50.1 bits (118), Expect = 2e-05
Identities = 26/53 (49%), Positives = 31/53 (58%)
Frame = -1
Query: 435 IDPALVGNIAPECYAVYIDIIDRCLKHEPDERPTMGEVEIQLEHALTLQQEAD 277
IDP L G I EC + D ++CL ERPTMG+V LE AL LQ+ AD
Sbjct: 746 IDPNLKGKINAECLKKFADTAEKCLNDSGLERPTMGDVLWNLEFALQLQETAD 798
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,593,823
Number of Sequences: 1393205
Number of extensions: 9729321
Number of successful extensions: 29067
Number of sequences better than 10.0: 197
Number of HSP's better than 10.0 without gapping: 28105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29047
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
