Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004309A_C01 KMC004309A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563790.1| transcription factor IIA large subunit; protein... 131 5e-30
emb|CAA67368.1| TFIIA [Arabidopsis thaliana] 126 2e-28
pir||T51333 transcription factor IIA large chain [validated] - A... 126 2e-28
ref|NP_172228.2| transcription factor IIA large subunit; protein... 126 2e-28
pir||D86209 protein F22G5.18 [imported] - Arabidopsis thaliana g... 120 2e-26
>ref|NP_563790.1| transcription factor IIA large subunit; protein id: At1g07470.1,
supported by cDNA: 19512., supported by cDNA:
gi_14532725, supported by cDNA: gi_15146225, supported
by cDNA: gi_15983369 [Arabidopsis thaliana]
gi|14532726|gb|AAK64164.1| putative transcription factor
IIA large subunit [Arabidopsis thaliana]
gi|15146226|gb|AAK83596.1| At1g07470/F22G5_13
[Arabidopsis thaliana]
gi|15983370|gb|AAL11553.1|AF424559_1 At1g07470/F22G5_13
[Arabidopsis thaliana] gi|21554033|gb|AAM63114.1|
transcription factor IIA large subunit [Arabidopsis
thaliana] gi|22136784|gb|AAM91736.1| putative
transcription factor IIA large subunit [Arabidopsis
thaliana]
Length = 375
Score = 131 bits (330), Expect = 5e-30
Identities = 64/78 (82%), Positives = 71/78 (90%), Gaps = 2/78 (2%)
Frame = -2
Query: 552 VPNDD-DDDDEPLNENDDD-ELDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIM 379
VPND +DD+E LNE+DDD ELDDL+ GED NT HLVLAQFDKVTRTKSRWKC+LKDGIM
Sbjct: 298 VPNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIM 357
Query: 378 HINNKDVLFNKATGEFDF 325
HIN+KD+LFNKATGEFDF
Sbjct: 358 HINDKDILFNKATGEFDF 375
>emb|CAA67368.1| TFIIA [Arabidopsis thaliana]
Length = 375
Score = 126 bits (317), Expect = 2e-28
Identities = 59/72 (81%), Positives = 66/72 (90%), Gaps = 1/72 (1%)
Frame = -2
Query: 537 DDDDEPLNENDDD-ELDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKD 361
+DD+E LNE+DDD ELDDL+ GED NT HLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KD
Sbjct: 304 EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKD 363
Query: 360 VLFNKATGEFDF 325
+LFNKA GEFDF
Sbjct: 364 ILFNKAAGEFDF 375
>pir||T51333 transcription factor IIA large chain [validated] - Arabidopsis
thaliana gi|2826884|emb|CAA11525.1| transcription factor
IIA large subunit [Arabidopsis thaliana]
Length = 375
Score = 126 bits (317), Expect = 2e-28
Identities = 59/72 (81%), Positives = 66/72 (90%), Gaps = 1/72 (1%)
Frame = -2
Query: 537 DDDDEPLNENDDD-ELDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKD 361
+DD+E LNE+DDD ELDDL+ GED NT HLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KD
Sbjct: 304 EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKD 363
Query: 360 VLFNKATGEFDF 325
+LFNKA GEFDF
Sbjct: 364 ILFNKAAGEFDF 375
>ref|NP_172228.2| transcription factor IIA large subunit; protein id: At1g07480.1,
supported by cDNA: gi_17065293 [Arabidopsis thaliana]
gi|17065294|gb|AAL32801.1| similar to TFIIA [Arabidopsis
thaliana]
Length = 218
Score = 126 bits (317), Expect = 2e-28
Identities = 59/72 (81%), Positives = 66/72 (90%), Gaps = 1/72 (1%)
Frame = -2
Query: 537 DDDDEPLNENDDD-ELDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIMHINNKD 361
+DD+E LNE+DDD ELDDL+ GED NT HLVLAQFDKVTRTKSRWKC+LKDGIMHIN+KD
Sbjct: 147 EDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIMHINDKD 206
Query: 360 VLFNKATGEFDF 325
+LFNKA GEFDF
Sbjct: 207 ILFNKAAGEFDF 218
>pir||D86209 protein F22G5.18 [imported] - Arabidopsis thaliana
gi|8778565|gb|AAF79573.1|AC022464_31 F22G5.18
[Arabidopsis thaliana]
Length = 475
Score = 120 bits (300), Expect = 2e-26
Identities = 59/77 (76%), Positives = 67/77 (86%), Gaps = 2/77 (2%)
Frame = -2
Query: 552 VPNDD-DDDDEPLNENDDD-ELDDLDQGEDQNTHHLVLAQFDKVTRTKSRWKCTLKDGIM 379
VPND +DD+E LNE+DDD ELDDL+ GED NT HLVLAQFDKVTRTKSRWKC+LKDGIM
Sbjct: 319 VPNDIIEDDEELLNEDDDDDELDDLESGEDMNTQHLVLAQFDKVTRTKSRWKCSLKDGIM 378
Query: 378 HINNKDVLFNKATGEFD 328
HIN+KD+LFNKA+ D
Sbjct: 379 HINDKDILFNKASSTSD 395
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,447,586
Number of Sequences: 1393205
Number of extensions: 10162637
Number of successful extensions: 107347
Number of sequences better than 10.0: 782
Number of HSP's better than 10.0 without gapping: 40369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80025
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
