Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004307A_C01 KMC004307A_c01
(482 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO41908.1| unknown protein [Arabidopsis thaliana] gi|2882768... 48 5e-05
gb|EAA13299.1| ebiP3410 [Anopheles gambiae str. PEST] 33 1.6
ref|XP_231449.1| similar to glyceraldehyde-3-phosphate dehydroge... 32 4.8
ref|NP_762818.1| Predicted membrane-associated metal-dependent h... 31 6.2
ref|NP_715508.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate (DA... 31 8.1
>gb|AAO41908.1| unknown protein [Arabidopsis thaliana] gi|28827688|gb|AAO50688.1|
unknown protein [Arabidopsis thaliana]
Length = 538
Score = 48.1 bits (113), Expect = 5e-05
Identities = 25/57 (43%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Frame = -1
Query: 461 RQESAPKKKLISKKKVKK--VLEIPGSAKRLKIKEKAVLTDVFSKYEKRAVLASKDN 297
++E K K++ K + KK +EIPGS+KRLK+KEKA+LT V KY + S ++
Sbjct: 481 KKEKKKKTKILVKGQAKKGTKIEIPGSSKRLKVKEKALLTGVLVKYAAKVASTSNND 537
>gb|EAA13299.1| ebiP3410 [Anopheles gambiae str. PEST]
Length = 574
Score = 33.1 bits (74), Expect = 1.6
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 4/82 (4%)
Frame = -1
Query: 458 QESAPKKKLISKKKVK-KVLEIPGSAKRLKIKEKAVL---TDVFSKYEKRAVLASKDN** 291
Q+ KKK K +VK KVLE G + L + KA+L T+ + +Y + + +
Sbjct: 326 QKEYEKKKSQFKDEVKNKVLEQYGGEEHLAVPPKALLLAQTENYVEYSRYGKIIKGQDKP 385
Query: 290 IVNDQRLSLSKLKNHVTCWGTF 225
I+ + + NH T WG++
Sbjct: 386 IIRSRYEEDVYINNHTTVWGSY 407
>ref|XP_231449.1| similar to glyceraldehyde-3-phosphate dehydrogenase [Rattus
norvegicus]
Length = 303
Score = 31.6 bits (70), Expect = 4.8
Identities = 14/32 (43%), Positives = 21/32 (64%)
Frame = +3
Query: 105 LRKNALILRRDSSIKILDNTSYATT*LDTESK 200
L N ++L+ D+++KI NTSY T LD +K
Sbjct: 91 LTSNGVVLKYDNTLKIASNTSYTTNDLDLLAK 122
>ref|NP_762818.1| Predicted membrane-associated metal-dependent hydrolase [Vibrio
vulnificus CMCP6] gi|27358860|gb|AAO07808.1|AE016811_49
Predicted membrane-associated metal-dependent hydrolase
[Vibrio vulnificus CMCP6]
Length = 529
Score = 31.2 bits (69), Expect = 6.2
Identities = 14/26 (53%), Positives = 19/26 (72%)
Frame = +1
Query: 358 AFSLIFNLFADPGISKTFFTFFLEIS 435
AF+L+FNLF+ P I+K FF L +S
Sbjct: 43 AFNLLFNLFSWPWITKPFFAVLLLVS 68
>ref|NP_715508.1| 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase
[Wigglesworthia brevipalpis] gi|25166191|dbj|BAC24382.1|
aroF [Wigglesworthia brevipalpis]
Length = 345
Score = 30.8 bits (68), Expect = 8.1
Identities = 13/48 (27%), Positives = 28/48 (58%)
Frame = -1
Query: 455 ESAPKKKLISKKKVKKVLEIPGSAKRLKIKEKAVLTDVFSKYEKRAVL 312
E KKLIS KK+KK+ +I + ++ + ++++ +K + R ++
Sbjct: 6 EKIKYKKLISPKKLKKIFKIKKEEEFFVLRSRKTISNIINKKDNRKLI 53
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,266,828
Number of Sequences: 1393205
Number of extensions: 6819185
Number of successful extensions: 20004
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19707
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
