Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004303A_C01 KMC004303A_c01
(583 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN63691.1|AF454495_17 Eps4O [Streptococcus thermophilus] 33 2.0
ref|NP_509429.1| Transmembrane 9 superfamily member 2 (75.3 kD) ... 33 2.0
gb|AAO51247.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 32 4.4
ref|NP_034299.2| coagulation factor II (thrombin) receptor; thro... 32 5.8
gb|AAA40438.1| thrombin receptor 32 5.8
>gb|AAN63691.1|AF454495_17 Eps4O [Streptococcus thermophilus]
Length = 476
Score = 33.5 bits (75), Expect = 2.0
Identities = 26/98 (26%), Positives = 53/98 (53%), Gaps = 2/98 (2%)
Frame = -2
Query: 318 LIFLKYLKSFTITTIIFLIQLPVSTLAIHYFKLNDKDYKPWHPPFIIIG--SWLDIYCIF 145
LIF+ + KS++ I+ IQ+ +TL + +F + +++K II+ S + I+ F
Sbjct: 99 LIFINFYKSYSYFLILQSIQIIATTLDVSWFFVGMEEFKKTVARNIIVKIISTISIFS-F 157
Query: 144 LYS*KLVRLFIVLLNCNLIKFNVTDWFNLGIFALV*SF 31
+ S + ++I+LL + + N+T W + + + SF
Sbjct: 158 VRSRNDLGIYILLLAVSTLLGNLTLWSYVKYYITLISF 195
>ref|NP_509429.1| Transmembrane 9 superfamily member 2 (75.3 kD) [Caenorhabditis
elegans] gi|7498641|pir||T32472 hypothetical protein
F08F1.7 - Caenorhabditis elegans
gi|2435604|gb|AAB71307.1| Hypothetical protein F08F1.7
[Caenorhabditis elegans]
Length = 655
Score = 33.5 bits (75), Expect = 2.0
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Frame = -2
Query: 357 NSILSYRGAGPWHLIFLKYLKSFTITTIIFLIQLPVSTLAIHYFKLNDKDYKPWHPPFII 178
NSI +++ + +FL YL I +I +T+ + YF L +DY W F+
Sbjct: 536 NSIWAHQTYYMFGFLFLVYL--------ILIITCSEATILLAYFHLCAEDYHWWWRSFMT 587
Query: 177 IG---SWLDIYCIFLYS*KL 127
G +L IYCI ++ KL
Sbjct: 588 SGFTAIYLFIYCIHFFNTKL 607
>gb|AAO51247.1| similar to Arabidopsis thaliana (Mouse-ear cress).
T5E21.14/T5E21.14 (At1g14670/T5E21.14) [Dictyostelium
discoideum]
Length = 616
Score = 32.3 bits (72), Expect = 4.4
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 6/57 (10%)
Frame = -2
Query: 291 FTITTIIFLIQLPVS---TLAIHYFKLNDKDYKPWHPPFIIIGS---WLDIYCIFLY 139
+ I ++FLI + V+ T+A+ YF+L+ +D+K W FI GS ++ +Y I+ Y
Sbjct: 508 YGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYY 564
>ref|NP_034299.2| coagulation factor II (thrombin) receptor; thrombin receptor [Mus
musculus] gi|2506486|sp|P30558|PAR1_MOUSE Proteinase
activated receptor 1 precursor (PAR-1) (Thrombin
receptor) gi|1710885|gb|AAB38308.1| thrombin receptor
[Mus musculus] gi|21594528|gb|AAH31516.1| Unknown
(protein for MGC:28086) [Mus musculus]
gi|26351901|dbj|BAC39587.1| unnamed protein product [Mus
musculus]
Length = 430
Score = 32.0 bits (71), Expect = 5.8
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = -2
Query: 327 PWHLIFLKYLKSFTITTIIFLIQLPVSTLAIHYFKLNDKDYKP 199
PW +F+ ++ TI+F++ LP++ LAI F L K KP
Sbjct: 104 PWLTLFMP-----SVYTIVFIVSLPLNVLAIAVFVLRMKVKKP 141
>gb|AAA40438.1| thrombin receptor
Length = 430
Score = 32.0 bits (71), Expect = 5.8
Identities = 16/43 (37%), Positives = 25/43 (57%)
Frame = -2
Query: 327 PWHLIFLKYLKSFTITTIIFLIQLPVSTLAIHYFKLNDKDYKP 199
PW +F+ ++ TI+F++ LP++ LAI F L K KP
Sbjct: 104 PWLTLFMP-----SVYTIVFIVSLPLNVLAIAVFVLRMKVKKP 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,311,588
Number of Sequences: 1393205
Number of extensions: 9525615
Number of successful extensions: 18920
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 18446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18919
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
