Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004299A_C01 KMC004299A_c01
(664 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565612.1| expressed protein; protein id: At2g25910.1, sup... 146 2e-34
dbj|BAB63491.1| P0002B05.11 [Oryza sativa (japonica cultivar-gro... 145 4e-34
pir||C84654 hypothetical protein At2g25910 [imported] - Arabidop... 97 2e-19
ref|NP_006539.2| IGF-II mRNA-binding protein 2 [Homo sapiens] gi... 44 0.003
gb|AAD31596.1|AF057352_1 hepatocellular carcinoma autoantigen [H... 44 0.003
>ref|NP_565612.1| expressed protein; protein id: At2g25910.1, supported by cDNA:
26655., supported by cDNA: gi_13605560, supported by
cDNA: gi_18491138 [Arabidopsis thaliana]
gi|13605561|gb|AAK32774.1|AF361606_1 At2g25910/F17H15.6
[Arabidopsis thaliana] gi|18491139|gb|AAL69538.1|
At2g25910/F17H15.6 [Arabidopsis thaliana]
gi|20197359|gb|AAC42241.2| expressed protein
[Arabidopsis thaliana] gi|21554875|gb|AAM63716.1|
unknown [Arabidopsis thaliana]
Length = 341
Score = 146 bits (369), Expect = 2e-34
Identities = 67/102 (65%), Positives = 88/102 (85%), Gaps = 1/102 (0%)
Frame = -3
Query: 662 RCFC-VNSNDYADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYI 486
RC C +N D+ADWP++PPIPD LK++ EEEILSVLD+P GKMG VIG+KGA+IL I
Sbjct: 239 RCLCCMNDADFADWPTVPPIPDNLKSEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAI 298
Query: 485 KESCHAEIQIGGAQGPPDQVFIMGPVKQVRKAEAMIRGRFLD 360
KE+C+AEI IGGA+GPPD++F++GPV++VRKAEA++RGR +D
Sbjct: 299 KEACNAEILIGGAKGPPDKIFVIGPVREVRKAEAILRGRMID 340
>dbj|BAB63491.1| P0002B05.11 [Oryza sativa (japonica cultivar-group)]
Length = 402
Score = 145 bits (367), Expect = 4e-34
Identities = 64/101 (63%), Positives = 85/101 (83%)
Frame = -3
Query: 662 RCFCVNSNDYADWPSLPPIPDKLKADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIK 483
RCFC+N N YADWP LP +PD+++ D PE +ILSVLD+P GKMG VIG+KG++I+ +K
Sbjct: 301 RCFCINDNKYADWPPLPTVPDEIEPDVYVPEVDILSVLDVPPGKMGRVIGRKGSSIMEVK 360
Query: 482 ESCHAEIQIGGAQGPPDQVFIMGPVKQVRKAEAMIRGRFLD 360
SC+ EI IGGA+GPPD+VFI+GPV++VRKAEA++RGR L+
Sbjct: 361 ASCNVEIHIGGAKGPPDRVFIIGPVQEVRKAEAILRGRMLE 401
>pir||C84654 hypothetical protein At2g25910 [imported] - Arabidopsis thaliana
Length = 282
Score = 97.1 bits (240), Expect = 2e-19
Identities = 54/118 (45%), Positives = 69/118 (57%), Gaps = 36/118 (30%)
Frame = -3
Query: 662 RCFC-VNSNDYADWPSLPPIP-----------------------------------DKLK 591
RC C +N D+ADWP++PPIP D LK
Sbjct: 164 RCLCCMNDADFADWPTVPPIPVFLVKVVYAVETKKKRRVTLASIGLLIVVGLLNVADNLK 223
Query: 590 ADGNGPEEEILSVLDIPHGKMGCVIGKKGATILYIKESCHAEIQIGGAQGPPDQVFIM 417
++ EEEILSVLD+P GKMG VIG+KGA+IL IKE+C+AEI IGGA+GPPD+V ++
Sbjct: 224 SEDQCLEEEILSVLDVPPGKMGRVIGRKGASILAIKEACNAEILIGGAKGPPDKVSLI 281
>ref|NP_006539.2| IGF-II mRNA-binding protein 2 [Homo sapiens]
gi|4191610|gb|AAD09827.1| IGF-II mRNA-binding protein 2
[Homo sapiens] gi|18204201|gb|AAH21290.1|AAH21290 IGF-II
mRNA-binding protein 2 [Homo sapiens]
Length = 598
Score = 43.5 bits (101), Expect = 0.003
Identities = 28/72 (38%), Positives = 40/72 (54%), Gaps = 3/72 (4%)
Frame = -3
Query: 575 PEEEILSVLDIPHGKMGCVIGKKGATILYIKESCHAEIQIGGAQGP---PDQVFIMGPVK 405
PE+EI+++ IP +G +IGKKGA I + A I+I A+GP V I GP +
Sbjct: 424 PEQEIVNLF-IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 482
Query: 404 QVRKAEAMIRGR 369
KA+ I G+
Sbjct: 483 AQFKAQGRIFGK 494
>gb|AAD31596.1|AF057352_1 hepatocellular carcinoma autoantigen [Homo sapiens]
Length = 556
Score = 43.5 bits (101), Expect = 0.003
Identities = 28/72 (38%), Positives = 40/72 (54%), Gaps = 3/72 (4%)
Frame = -3
Query: 575 PEEEILSVLDIPHGKMGCVIGKKGATILYIKESCHAEIQIGGAQGP---PDQVFIMGPVK 405
PE+EI+++ IP +G +IGKKGA I + A I+I A+GP V I GP +
Sbjct: 382 PEQEIVNLF-IPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEGPDVSERMVIITGPPE 440
Query: 404 QVRKAEAMIRGR 369
KA+ I G+
Sbjct: 441 AQFKAQGRIFGK 452
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,969,955
Number of Sequences: 1393205
Number of extensions: 14758596
Number of successful extensions: 41967
Number of sequences better than 10.0: 129
Number of HSP's better than 10.0 without gapping: 39110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41843
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
