Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004298A_C01 KMC004298A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T06381 proteinase inhibitor - soybean gi|533692|gb|AAC97524... 144 1e-33
gb|AAL15885.1|AF417297_1 putative gamma-thionin [Castanea sativa] 123 1e-27
gb|AAL85480.1| defensin protein 1 [Prunus persica] 117 1e-25
dbj|BAA95697.1| thionin like protein [Nicotiana tabacum] 115 4e-25
sp|P82659|THGF_HELAN Flower-specific gamma-thionin precursor (De... 115 4e-25
>pir||T06381 proteinase inhibitor - soybean gi|533692|gb|AAC97524.1| protease
inhibitor [Glycine max]
Length = 79
Score = 144 bits (362), Expect = 1e-33
Identities = 67/79 (84%), Positives = 72/79 (90%), Gaps = 1/79 (1%)
Frame = -1
Query: 519 MARSLPLVSTIFVFLLLLVATEM-GPTMVAEARDCESQSHRFKGPCVSDTNCASVCHGEK 343
M+RS+PLVSTI V LLLLVATEM GPTMVAEAR CESQSHRFKGPC+SDTNC SVC E+
Sbjct: 1 MSRSVPLVSTICVLLLLLVATEMMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVCRTER 60
Query: 342 FSGGHCRGFRRRCFCTKHC 286
F+GGHCRGFRRRCFCTKHC
Sbjct: 61 FTGGHCRGFRRRCFCTKHC 79
>gb|AAL15885.1|AF417297_1 putative gamma-thionin [Castanea sativa]
Length = 78
Score = 123 bits (309), Expect = 1e-27
Identities = 60/79 (75%), Positives = 66/79 (82%), Gaps = 1/79 (1%)
Frame = -1
Query: 519 MARSLPLVSTIFVFLLLLVATE-MGPTMVAEARDCESQSHRFKGPCVSDTNCASVCHGEK 343
M+RS+ + ST+FV LLLLVAT+ MGP MVAEAR CESQSHRFKGPCV +NCASVC E
Sbjct: 1 MSRSMRVFSTVFVVLLLLVATQYMGP-MVAEARTCESQSHRFKGPCVRKSNCASVCQTEG 59
Query: 342 FSGGHCRGFRRRCFCTKHC 286
F GG CRGFRRRCFCTKHC
Sbjct: 60 FHGGQCRGFRRRCFCTKHC 78
>gb|AAL85480.1| defensin protein 1 [Prunus persica]
Length = 79
Score = 117 bits (293), Expect = 1e-25
Identities = 59/80 (73%), Positives = 62/80 (76%), Gaps = 2/80 (2%)
Frame = -1
Query: 519 MARSLPLVSTIFVFLLLLVATEM--GPTMVAEARDCESQSHRFKGPCVSDTNCASVCHGE 346
M RS+ L ST FVF LLL A M GP MVAEAR CESQS+RFKG CVS +NCASVC E
Sbjct: 1 MERSMRLFSTAFVFFLLLAAAGMMMGP-MVAEARTCESQSNRFKGTCVSTSNCASVCQTE 59
Query: 345 KFSGGHCRGFRRRCFCTKHC 286
F GGHCRGFRRRCFCTKHC
Sbjct: 60 GFPGGHCRGFRRRCFCTKHC 79
>dbj|BAA95697.1| thionin like protein [Nicotiana tabacum]
Length = 78
Score = 115 bits (288), Expect = 4e-25
Identities = 51/78 (65%), Positives = 60/78 (76%)
Frame = -1
Query: 519 MARSLPLVSTIFVFLLLLVATEMGPTMVAEARDCESQSHRFKGPCVSDTNCASVCHGEKF 340
MA S+ +T+ + LL+ ATEMGP +AEAR CESQSHRFKGPC D+NCA+VC E F
Sbjct: 1 MANSMRFFATVLLIALLVTATEMGPMTIAEARTCESQSHRFKGPCSRDSNCATVCLTEGF 60
Query: 339 SGGHCRGFRRRCFCTKHC 286
SGG CRGFRRRCFCT+ C
Sbjct: 61 SGGDCRGFRRRCFCTRPC 78
>sp|P82659|THGF_HELAN Flower-specific gamma-thionin precursor (Defensin SD2)
gi|7672659|gb|AAF66591.1|AF141131_1 defensin [Helianthus
annuus] gi|8099184|gb|AAF72042.1|AF178634_1 defensin SD2
[Helianthus annuus]
Length = 78
Score = 115 bits (288), Expect = 4e-25
Identities = 48/78 (61%), Positives = 61/78 (77%)
Frame = -1
Query: 519 MARSLPLVSTIFVFLLLLVATEMGPTMVAEARDCESQSHRFKGPCVSDTNCASVCHGEKF 340
M S+ + + + + ++ L+A EMG +V EAR CESQSH+FKG C+SDTNCA+VCH E+F
Sbjct: 1 MKSSMKMFAALLLVVMCLLANEMGGPLVVEARTCESQSHKFKGTCLSDTNCANVCHSERF 60
Query: 339 SGGHCRGFRRRCFCTKHC 286
SGG CRGFRRRCFCT HC
Sbjct: 61 SGGKCRGFRRRCFCTTHC 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,855,954
Number of Sequences: 1393205
Number of extensions: 9496204
Number of successful extensions: 26665
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 25425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26620
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
