Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004295A_C01 KMC004295A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179388.1| similar to putative zinc finger protein; protei... 37 0.13
dbj|BAC45201.1| putative peroxidase [Oryza sativa (japonica cult... 35 0.51
ref|XP_230216.1| similar to olfactory receptor MOR230-3 [Mus mus... 35 0.66
ref|NP_667105.1| olfactory receptor MOR230-3 [Mus musculus] gi|1... 35 0.66
ref|XP_141194.1| similar to gene for odorant receptor A16 [Mus m... 35 0.66
>ref|NP_179388.1| similar to putative zinc finger protein; protein id: At2g17975.1
[Arabidopsis thaliana] gi|7486984|pir||T00827
hypothetical protein T13L16.1 - Arabidopsis thaliana
gi|20197597|gb|AAM15145.1| predicted protein
[Arabidopsis thaliana]
Length = 268
Score = 37.4 bits (85), Expect = 0.13
Identities = 13/14 (92%), Positives = 13/14 (92%)
Frame = -1
Query: 338 WMCTNCNNHNYASR 297
WMCTNC NHNYASR
Sbjct: 232 WMCTNCKNHNYASR 245
Score = 32.3 bits (72), Expect = 4.3
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = -1
Query: 365 TKHMALVESWMCTNCNNHNYASR 297
+K + + W+CT C N+NYASR
Sbjct: 43 SKWLPRIGDWICTGCTNNNYASR 65
>dbj|BAC45201.1| putative peroxidase [Oryza sativa (japonica cultivar-group)]
Length = 384
Score = 35.4 bits (80), Expect = 0.51
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 502 GNSADPKPGVFPSYPGINSSTAPSLPMPQLLPP 404
GN++ P P +PS P ++ ST P+ P P PP
Sbjct: 24 GNASPPTPITYPSPPSLSPSTPPTYPPPSSTPP 56
>ref|XP_230216.1| similar to olfactory receptor MOR230-3 [Mus musculus] [Rattus
norvegicus]
Length = 264
Score = 35.0 bits (79), Expect = 0.66
Identities = 26/87 (29%), Positives = 40/87 (45%)
Frame = -2
Query: 451 NSSTAPSLPMPQLLPPHSLYFQHCLGTRKRSTWR*WRAGCAQIATIIIMLPDYTCNRCKT 272
++STAP L + L + + + C+ + GC +I +I+M D CK
Sbjct: 72 STSTAPRLIVDALSKKNIISYNECM----TQVFALHLFGCMEIFVLILMAVDRYVAICKP 127
Query: 271 QRVAPHATRQCCVMLNFFSYIVAWPGS 191
R +RQ CV+L I+AW GS
Sbjct: 128 LRYPVIMSRQVCVIL----IILAWIGS 150
>ref|NP_667105.1| olfactory receptor MOR230-3 [Mus musculus]
gi|18479686|gb|AAL60857.1| olfactory receptor MOR230-3
[Mus musculus]
Length = 307
Score = 35.0 bits (79), Expect = 0.66
Identities = 26/87 (29%), Positives = 40/87 (45%)
Frame = -2
Query: 451 NSSTAPSLPMPQLLPPHSLYFQHCLGTRKRSTWR*WRAGCAQIATIIIMLPDYTCNRCKT 272
++STAP L + L + + + C+ + GC +I +I+M D CK
Sbjct: 72 STSTAPRLIVDALSKKNIISYNECM----TQVFALHLFGCMEIFVLILMAVDRYVAICKP 127
Query: 271 QRVAPHATRQCCVMLNFFSYIVAWPGS 191
R +RQ CV+L I+AW GS
Sbjct: 128 LRYPVIMSRQVCVIL----IILAWIGS 150
>ref|XP_141194.1| similar to gene for odorant receptor A16 [Mus musculus]
Length = 307
Score = 35.0 bits (79), Expect = 0.66
Identities = 26/87 (29%), Positives = 40/87 (45%)
Frame = -2
Query: 451 NSSTAPSLPMPQLLPPHSLYFQHCLGTRKRSTWR*WRAGCAQIATIIIMLPDYTCNRCKT 272
++STAP L + L + + + C+ + GC +I +I+M D CK
Sbjct: 72 STSTAPRLIVDALSKKNIISYNECM----TQVFALHLFGCMEIFVLILMAVDRYVAICKP 127
Query: 271 QRVAPHATRQCCVMLNFFSYIVAWPGS 191
R +RQ CV+L I+AW GS
Sbjct: 128 LRYPVIMSRQVCVIL----IILAWIGS 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,989,027
Number of Sequences: 1393205
Number of extensions: 11676786
Number of successful extensions: 32275
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 30484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32217
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
