Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004293A_C02 KMC004293A_c02
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61687.1| unknown [Arabidopsis thaliana] 80 2e-31
ref|NP_569014.1| bHLH protein; protein id: At5g65640.1, supporte... 80 2e-31
ref|NP_196619.1| bHLH protein; protein id: At5g10570.1, supporte... 72 5e-25
gb|AAM10950.1|AF488594_1 putative bHLH transcription factor [Ara... 72 5e-25
gb|AAN05491.1| Putative bHLH transcription protein [Oryza sativa... 69 5e-22
>gb|AAM61687.1| unknown [Arabidopsis thaliana]
Length = 351
Score = 79.7 bits (195), Expect(2) = 2e-31
Identities = 38/51 (74%), Positives = 43/51 (83%)
Frame = -3
Query: 359 GLEIHQCVISSFSDFSLQASCSEAAGQRNCMSPEEIKPALFRNAGYGGRCV 207
GLEI QCVIS FSDFSLQASCSE A QR+ ++ E+IK ALFRNAGYGG C+
Sbjct: 301 GLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQALFRNAGYGGSCL 351
Score = 77.4 bits (189), Expect(2) = 2e-31
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = -2
Query: 513 GISKEHKPNEAMVRNSPKFDVERKDQDTRISICCATKPGLLLSTVNTLEALG 358
G K+ NE +VRNSPKF+++R+D+DTR+ ICC+ KPGLLLSTVNTLE LG
Sbjct: 250 GDLKDLNANEPLVRNSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLG 301
>ref|NP_569014.1| bHLH protein; protein id: At5g65640.1, supported by cDNA: 13267.
[Arabidopsis thaliana]
Length = 351
Score = 79.7 bits (195), Expect(2) = 2e-31
Identities = 38/51 (74%), Positives = 43/51 (83%)
Frame = -3
Query: 359 GLEIHQCVISSFSDFSLQASCSEAAGQRNCMSPEEIKPALFRNAGYGGRCV 207
GLEI QCVIS FSDFSLQASCSE A QR+ ++ E+IK ALFRNAGYGG C+
Sbjct: 301 GLEIEQCVISCFSDFSLQASCSEGAEQRDFITSEDIKQALFRNAGYGGSCL 351
Score = 77.4 bits (189), Expect(2) = 2e-31
Identities = 34/52 (65%), Positives = 43/52 (82%)
Frame = -2
Query: 513 GISKEHKPNEAMVRNSPKFDVERKDQDTRISICCATKPGLLLSTVNTLEALG 358
G K+ NE +VRNSPKF+++R+D+DTR+ ICC+ KPGLLLSTVNTLE LG
Sbjct: 250 GDLKDLNANEPLVRNSPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLG 301
>ref|NP_196619.1| bHLH protein; protein id: At5g10570.1, supported by cDNA:
gi_20127061 [Arabidopsis thaliana]
gi|11357367|pir||T49982 hypothetical protein F12B17.80 -
Arabidopsis thaliana gi|7671446|emb|CAB89386.1| putative
protein [Arabidopsis thaliana]
Length = 315
Score = 72.0 bits (175), Expect(2) = 5e-25
Identities = 35/51 (68%), Positives = 38/51 (73%)
Frame = -3
Query: 359 GLEIHQCVISSFSDFSLQASCSEAAGQRNCMSPEEIKPALFRNAGYGGRCV 207
GLEI QCVIS FSDFSLQASC E QR ++ E K AL RNAGYGGRC+
Sbjct: 265 GLEIEQCVISCFSDFSLQASCFEVGEQRYMVTSEATKQALIRNAGYGGRCL 315
Score = 63.5 bits (153), Expect(2) = 5e-25
Identities = 28/44 (63%), Positives = 38/44 (85%)
Frame = -2
Query: 489 NEAMVRNSPKFDVERKDQDTRISICCATKPGLLLSTVNTLEALG 358
NE+MVRNS KF+V++++ +T I ICC TKPGL++STV+TLE LG
Sbjct: 222 NESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLG 265
>gb|AAM10950.1|AF488594_1 putative bHLH transcription factor [Arabidopsis thaliana]
Length = 315
Score = 72.0 bits (175), Expect(2) = 5e-25
Identities = 35/51 (68%), Positives = 38/51 (73%)
Frame = -3
Query: 359 GLEIHQCVISSFSDFSLQASCSEAAGQRNCMSPEEIKPALFRNAGYGGRCV 207
GLEI QCVIS FSDFSLQASC E QR ++ E K AL RNAGYGGRC+
Sbjct: 265 GLEIEQCVISCFSDFSLQASCFEVGEQRYMVTSEATKQALIRNAGYGGRCL 315
Score = 63.5 bits (153), Expect(2) = 5e-25
Identities = 28/44 (63%), Positives = 38/44 (85%)
Frame = -2
Query: 489 NEAMVRNSPKFDVERKDQDTRISICCATKPGLLLSTVNTLEALG 358
NE+MVRNS KF+V++++ +T I ICC TKPGL++STV+TLE LG
Sbjct: 222 NESMVRNSLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLG 265
>gb|AAN05491.1| Putative bHLH transcription protein [Oryza sativa (japonica
cultivar-group)]
Length = 430
Score = 68.6 bits (166), Expect(2) = 5e-22
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = -3
Query: 359 GLEIHQCVISSFSDFSLQASCSEAAGQRNCMSPEEIKPALFRNAGYGGR 213
GLEI QCV+S FSDF +QASC + G+R +S +EIK LFR+AGYGGR
Sbjct: 304 GLEIEQCVVSCFSDFGMQASCLQEDGKRQVVSTDEIKQTLFRSAGYGGR 352
Score = 57.0 bits (136), Expect(2) = 5e-22
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Frame = -2
Query: 489 NEAMVRNSPKFDVERKDQ-DTRISICCATKPGLLLSTVNTLEALG 358
NE +VRNS KFDVE + +TRI ICC PG+LLSTV+ LE LG
Sbjct: 260 NEMLVRNSTKFDVENRGSGNTRIEICCPANPGVLLSTVSALEVLG 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,383,742
Number of Sequences: 1393205
Number of extensions: 9130349
Number of successful extensions: 21099
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21093
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
