Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004292A_C01 KMC004292A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87667.1| transcription factor RAU1 [Oryza sativa] 101 4e-21
ref|NP_181757.1| bHLH protein; protein id: At2g42280.1 [Arabidop... 99 2e-20
ref|NP_564583.1| expressed protein; protein id: At1g51140.1, sup... 96 3e-19
gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda] 88 6e-17
ref|NP_174776.1| bHLH protein; protein id: At1g35460.1, supporte... 87 8e-17
>gb|AAL87667.1| transcription factor RAU1 [Oryza sativa]
Length = 150
Score = 101 bits (252), Expect = 4e-21
Identities = 51/70 (72%), Positives = 57/70 (80%)
Frame = -2
Query: 497 RSIAERVRRTRISERIRKLQELVPNLDKQTSTAEMLDLAAVYINDLQKQFKTLSEKRAKC 318
RSIAERVRRTRISERIRKLQELVPN+DKQT+TA+MLDLA YI DLQKQ K L++ RA C
Sbjct: 80 RSIAERVRRTRISERIRKLQELVPNMDKQTNTADMLDLAVDYIKDLQKQVKGLNDSRANC 139
Query: 317 KCTRMHTSES 288
C+ H S
Sbjct: 140 TCSAKHQQYS 149
>ref|NP_181757.1| bHLH protein; protein id: At2g42280.1 [Arabidopsis thaliana]
gi|7487413|pir||T00937 hypothetical protein At2g42280
[imported] - Arabidopsis thaliana
gi|2673918|gb|AAB88652.1| unknown protein [Arabidopsis
thaliana]
Length = 380
Score = 99.4 bits (246), Expect = 2e-20
Identities = 47/62 (75%), Positives = 56/62 (89%)
Frame = -2
Query: 497 RSIAERVRRTRISERIRKLQELVPNLDKQTSTAEMLDLAAVYINDLQKQFKTLSEKRAKC 318
RSIAERVRRTRISER+RKLQELVPN+DKQT+T++MLDLA YI DLQ+Q+K L++ RA C
Sbjct: 311 RSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYKILNDNRANC 370
Query: 317 KC 312
KC
Sbjct: 371 KC 372
>ref|NP_564583.1| expressed protein; protein id: At1g51140.1, supported by cDNA:
gi_14334499, supported by cDNA: gi_17104810 [Arabidopsis
thaliana] gi|25405437|pir||H96548 unknown protein
[imported] - Arabidopsis thaliana
gi|12320788|gb|AAG50543.1|AC079828_14 unknown protein
[Arabidopsis thaliana] gi|14334500|gb|AAK59447.1|
unknown protein [Arabidopsis thaliana]
gi|17104811|gb|AAL34294.1| unknown protein [Arabidopsis
thaliana]
Length = 379
Score = 95.5 bits (236), Expect = 3e-19
Identities = 45/63 (71%), Positives = 55/63 (86%)
Frame = -2
Query: 497 RSIAERVRRTRISERIRKLQELVPNLDKQTSTAEMLDLAAVYINDLQKQFKTLSEKRAKC 318
RSIAERVRRT+ISER+RKLQ+LVPN+D QT+TA+MLDLA YI DLQ+Q K L E RA+C
Sbjct: 315 RSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVKALEESRARC 374
Query: 317 KCT 309
+C+
Sbjct: 375 RCS 377
>gb|AAF04760.1|AF103808_1 helix-loop-helix protein 1A [Pinus taeda]
Length = 551
Score = 87.8 bits (216), Expect = 6e-17
Identities = 46/64 (71%), Positives = 52/64 (80%), Gaps = 1/64 (1%)
Frame = -2
Query: 497 RSIAERVRRTRISERIRKLQELVPNLDKQT-STAEMLDLAAVYINDLQKQFKTLSEKRAK 321
RSIAERVRRTRISER+RKLQELVPN DKQT + A+MLD A Y+ LQKQ + L+E RAK
Sbjct: 479 RSIAERVRRTRISERMRKLQELVPNSDKQTVNIADMLDEAVEYVKSLQKQVQELAENRAK 538
Query: 320 CKCT 309
C CT
Sbjct: 539 CTCT 542
>ref|NP_174776.1| bHLH protein; protein id: At1g35460.1, supported by cDNA:
gi_15724177, supported by cDNA: gi_20127087, supported
by cDNA: gi_20147400 [Arabidopsis thaliana]
gi|25518665|pir||F86475 hypothetical protein F12A4.2 -
Arabidopsis thaliana
gi|12324283|gb|AAG52112.1|AC023064_5 helix-loop-helix
protein 1A, putative; 28707-26892 [Arabidopsis thaliana]
gi|15724178|gb|AAL06481.1|AF411791_1 At1g35460/F12A4_2
[Arabidopsis thaliana]
gi|20127088|gb|AAM10958.1|AF488612_1 putative bHLH
transcription factor [Arabidopsis thaliana]
gi|20147401|gb|AAM10410.1| At1g35460/F12A4_2
[Arabidopsis thaliana]
Length = 259
Score = 87.4 bits (215), Expect = 8e-17
Identities = 41/62 (66%), Positives = 53/62 (85%)
Frame = -2
Query: 497 RSIAERVRRTRISERIRKLQELVPNLDKQTSTAEMLDLAAVYINDLQKQFKTLSEKRAKC 318
RSIAERVRRTRIS+RIR+LQELVPN+DKQT+TA+ML+ A Y+ LQ Q + L+E++ +C
Sbjct: 192 RSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQELTEQQKRC 251
Query: 317 KC 312
KC
Sbjct: 252 KC 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,931,087
Number of Sequences: 1393205
Number of extensions: 6793584
Number of successful extensions: 19102
Number of sequences better than 10.0: 203
Number of HSP's better than 10.0 without gapping: 18716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19092
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
