Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004291A_C01 KMC004291A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566951.1| strictosidine synthase-related; protein id: At3... 122 2e-27
pir||T45774 mucin-like protein - Arabidopsis thaliana gi|6572064... 122 2e-27
ref|NP_190712.1| strictosidine synthase-related; protein id: At3... 113 1e-24
ref|NP_190713.1| strictosidine synthase-related; protein id: At3... 113 1e-24
ref|NP_190710.1| strictosidine synthase-related; protein id: At3... 108 3e-23
>ref|NP_566951.1| strictosidine synthase-related; protein id: At3g51430.1, supported
by cDNA: 34197., supported by cDNA: gi_13122281,
supported by cDNA: gi_18086442, supported by cDNA:
gi_18087628 [Arabidopsis thaliana]
gi|13122282|dbj|BAB32882.1| strictosidine synthase-like
protein [Arabidopsis thaliana]
gi|18086443|gb|AAL57676.1| AT3g51430/F26O13_70
[Arabidopsis thaliana]
gi|18087629|gb|AAL58944.1|AF462858_1 AT3g51430/F26O13_70
[Arabidopsis thaliana] gi|21592926|gb|AAM64876.1|
mucin-like protein [Arabidopsis thaliana]
Length = 371
Score = 122 bits (307), Expect = 2e-27
Identities = 57/110 (51%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Frame = -2
Query: 485 LPGLPDNIHYDGQGQYWIGIATAFGTDLDVLFRYPFLRKVLAIVTKHVPSLSVVKNGGVL 306
LPG PDNI YDG G YWI + + T + +YPFLRK+ AI K+ L +KN GVL
Sbjct: 257 LPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKITAIAAKYGVELMFMKNAGVL 316
Query: 305 AVDLEGKPTAYYYDPKFT-LTSGIKIGNRLYCGSIIYPFLLRLDTEPYPA 159
VDL+G P AYY+D + + +T+GIKIGN LYCG+I++ +++RLD YPA
Sbjct: 317 QVDLDGNPIAYYHDQRLSHITTGIKIGNYLYCGNILHSYIIRLDLLKYPA 366
>pir||T45774 mucin-like protein - Arabidopsis thaliana
gi|6572064|emb|CAB63007.1| mucin-like protein
[Arabidopsis thaliana]
Length = 367
Score = 122 bits (307), Expect = 2e-27
Identities = 57/110 (51%), Positives = 76/110 (68%), Gaps = 1/110 (0%)
Frame = -2
Query: 485 LPGLPDNIHYDGQGQYWIGIATAFGTDLDVLFRYPFLRKVLAIVTKHVPSLSVVKNGGVL 306
LPG PDNI YDG G YWI + + T + +YPFLRK+ AI K+ L +KN GVL
Sbjct: 253 LPGYPDNIRYDGDGHYWIAMVSGASTLWRLSMKYPFLRKITAIAAKYGVELMFMKNAGVL 312
Query: 305 AVDLEGKPTAYYYDPKFT-LTSGIKIGNRLYCGSIIYPFLLRLDTEPYPA 159
VDL+G P AYY+D + + +T+GIKIGN LYCG+I++ +++RLD YPA
Sbjct: 313 QVDLDGNPIAYYHDQRLSHITTGIKIGNYLYCGNILHSYIIRLDLLKYPA 362
>ref|NP_190712.1| strictosidine synthase-related; protein id: At3g51440.1, supported
by cDNA: gi_13430723 [Arabidopsis thaliana]
gi|11358519|pir||T45775 mucin-like protein - Arabidopsis
thaliana gi|6572065|emb|CAB63008.1| mucin-like protein
[Arabidopsis thaliana]
gi|13430724|gb|AAK25984.1|AF360274_1 putative mucin
protein [Arabidopsis thaliana]
gi|23296634|gb|AAN13136.1| putative mucin protein
[Arabidopsis thaliana]
Length = 371
Score = 113 bits (283), Expect = 1e-24
Identities = 57/119 (47%), Positives = 76/119 (62%), Gaps = 2/119 (1%)
Frame = -2
Query: 509 GSMEKFCD-LPGLPDNIHYDGQGQYWIGIATAFGTDLDVLFRYPFLRKVLAIVTKHVPSL 333
G +E F LPG PDNI YDG G YWI + + T + +YPFLRK+ A+ K+
Sbjct: 248 GRVELFIQGLPGYPDNIRYDGDGHYWIAMPSGVTTLWKLSMKYPFLRKITAMAAKYGYEP 307
Query: 332 SVVKNGGVLAVDLEGKPTAYYYDPKFT-LTSGIKIGNRLYCGSIIYPFLLRLDTEPYPA 159
++N GVL VDL+G P AYY+D + +T+G+KIGN LYCGS+ + +LRLD YPA
Sbjct: 308 MFMENAGVLQVDLDGNPIAYYHDQALSHITTGVKIGNYLYCGSLWHSHILRLDLLKYPA 366
>ref|NP_190713.1| strictosidine synthase-related; protein id: At3g51450.1, supported
by cDNA: 38956., supported by cDNA: gi_18700142
[Arabidopsis thaliana] gi|11358520|pir||T45776
mucin-like protein - Arabidopsis thaliana
gi|6572066|emb|CAB63009.1| mucin-like protein
[Arabidopsis thaliana] gi|18700143|gb|AAL77683.1|
AT3g51450/F26O13_90 [Arabidopsis thaliana]
gi|21593437|gb|AAM65404.1| mucin-like protein
[Arabidopsis thaliana] gi|23506011|gb|AAN28865.1|
At3g51450/F26O13_90 [Arabidopsis thaliana]
Length = 371
Score = 113 bits (282), Expect = 1e-24
Identities = 55/110 (50%), Positives = 72/110 (65%), Gaps = 1/110 (0%)
Frame = -2
Query: 485 LPGLPDNIHYDGQGQYWIGIATAFGTDLDVLFRYPFLRKVLAIVTKHVPSLSVVKNGGVL 306
LPG PDNI YDG G YWI + + T ++ +YPFLRK+ A+V K+ L ++N GVL
Sbjct: 257 LPGYPDNIRYDGDGHYWIALPSGVTTLWNISLKYPFLRKLTAMVAKYGVDLMFMENAGVL 316
Query: 305 AVDLEGKPTAYYYDPKFT-LTSGIKIGNRLYCGSIIYPFLLRLDTEPYPA 159
VDL+G P AYY+DPK + + + KIG LYCGS+ +LRLD YPA
Sbjct: 317 QVDLDGNPIAYYHDPKLSHIATCDKIGKYLYCGSLSQSHILRLDLLKYPA 366
>ref|NP_190710.1| strictosidine synthase-related; protein id: At3g51420.1, supported
by cDNA: 38547. [Arabidopsis thaliana]
gi|11358517|pir||T45773 mucin-like protein - Arabidopsis
thaliana gi|6572063|emb|CAB63006.1| mucin-like protein
[Arabidopsis thaliana] gi|21593396|gb|AAM65345.1|
mucin-like protein [Arabidopsis thaliana]
Length = 370
Score = 108 bits (271), Expect = 3e-23
Identities = 52/110 (47%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Frame = -2
Query: 485 LPGLPDNIHYDGQGQYWIGIATAFGTDLDVLFRYPFLRKVLAIVTKHVPSLSVVKNGGVL 306
LPG PDNI YDG G YWI + + T + +Y FLRK++ + K+ L +KN VL
Sbjct: 257 LPGYPDNIRYDGDGHYWIALISEVTTSWKLSMKYLFLRKLIYMAAKYGVELLSIKNAAVL 316
Query: 305 AVDLEGKPTAYYYDPKFT-LTSGIKIGNRLYCGSIIYPFLLRLDTEPYPA 159
VDL+G P A Y+D F+ +TSG+KIGN LY GS+++ ++ RLD YPA
Sbjct: 317 QVDLDGNPIAMYHDHPFSHITSGVKIGNHLYFGSLLHSYITRLDLLKYPA 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,411,680
Number of Sequences: 1393205
Number of extensions: 10750433
Number of successful extensions: 21018
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 20405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21002
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
