Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004290A_C01 KMC004290A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_236152.1| similar to olfactory receptor MOR171-18 [Mus mu... 36 0.45
ref|XP_146786.1| similar to olfactory receptor MOR171-23 [Mus mu... 35 0.59
ref|NP_038252.1|COX3_15121 cytochrome c oxidase subunit III [Ech... 34 1.7
ref|XP_236154.1| similar to olfactory receptor MOR171-23 [Mus mu... 33 2.2
pir||A35349 H+-transporting ATP synthase protein 6 homolog - Try... 33 2.9
>ref|XP_236152.1| similar to olfactory receptor MOR171-18 [Mus musculus] [Rattus
norvegicus]
Length = 312
Score = 35.8 bits (81), Expect = 0.45
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -1
Query: 152 DILYFTSIIARILLQVIHIRQIVIFCEQGCLVVLCCFCTIIIYKCYM 12
D+ Y T II ++L+ + + I+ + GC+ L CF +I +CYM
Sbjct: 70 DLCYSTVIIPKMLVNFVTEKNIISY--PGCMTQLYCFIAFVISECYM 114
>ref|XP_146786.1| similar to olfactory receptor MOR171-23 [Mus musculus]
gi|25032227|ref|XP_205674.1| similar to olfactory
receptor MOR171-23 [Mus musculus]
Length = 312
Score = 35.4 bits (80), Expect = 0.59
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = -1
Query: 152 DILYFTSIIARILLQVIHIRQIVIFCEQGCLVVLCCFCTIIIYKCYM 12
D+ Y T II ++L+ + + I+ + E C+ L CF ++I +CYM
Sbjct: 70 DLCYSTVIIPKMLVNFVTEKNIISYPE--CMTQLYCFLVLVISECYM 114
>ref|NP_038252.1|COX3_15121 cytochrome c oxidase subunit III [Echinococcus multilocularis]
gi|6138996|dbj|BAA84927.2| cytochrome oxidase subunit 3
[Echinococcus multilocularis]
Length = 215
Score = 33.9 bits (76), Expect = 1.7
Identities = 26/94 (27%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = -1
Query: 305 CVLSGNCWC*SSMETSLNCILFGTYYYLCGLPICITKVSVCLIQFLECVMCDILYFTSII 126
C L +CWC SS+ +SL I F + L G + +T L CD+ F +I+
Sbjct: 74 CCLFFDCWCYSSLSSSLE-IPFVGCFVLLGSSVTVTGFH----HLLGWRFCDLFLFMTIV 128
Query: 125 ---ARILLQVIHIRQIVIFCEQGCLVVLCCFCTI 33
+ ++LQ++ + +I G FCT+
Sbjct: 129 LGLSFVVLQILEMEEIGFNVVDGSF-YSSSFCTV 161
>ref|XP_236154.1| similar to olfactory receptor MOR171-23 [Mus musculus] [Rattus
norvegicus]
Length = 312
Score = 33.5 bits (75), Expect = 2.2
Identities = 14/47 (29%), Positives = 27/47 (56%)
Frame = -1
Query: 152 DILYFTSIIARILLQVIHIRQIVIFCEQGCLVVLCCFCTIIIYKCYM 12
D+ Y T II ++L+ + + ++ + GC+ L CF ++ +CYM
Sbjct: 70 DLGYSTVIIPKMLVNFVTEKNVISY--PGCMTQLYCFIAFVLCECYM 114
>pir||A35349 H+-transporting ATP synthase protein 6 homolog - Trypanosoma brucei
mitochondrion
Length = 214
Score = 33.1 bits (74), Expect = 2.9
Identities = 23/80 (28%), Positives = 34/80 (41%), Gaps = 2/80 (2%)
Frame = -1
Query: 251 CILFGTYYYLCGLPICITKVSVCLIQFLECVMCDILYFTS-IIARILLQVIHIRQIVIFC 75
CI + Y L CI + FL C +CD F + ++ + V IR ++ F
Sbjct: 76 CITYLNLYLL----FCIVFLLYIAFLFLFCFLCDFFLFNNLLVGDSFMDVFFIRPLLCFL 131
Query: 74 EQGCLVVLC-CFCTIIIYKC 18
E C +LC C T + C
Sbjct: 132 E--CFSLLCRCLSTFLRLFC 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,353,571
Number of Sequences: 1393205
Number of extensions: 9329904
Number of successful extensions: 23531
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 22527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23459
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
