Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004283A_C01 KMC004283A_c01
(733 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200787.1| putative protein; protein id: At5g59790.1, supp... 99 5e-20
gb|AAL08561.1| auxin-regulated protein [Lycopersicon esculentum] 92 1e-17
dbj|BAB67886.1| P0031D11.20 [Oryza sativa (japonica cultivar-gro... 65 8e-10
dbj|BAC42479.1| unknown protein [Arabidopsis thaliana] gi|289509... 65 1e-09
ref|NP_190197.1| putative protein; protein id: At3g46110.1 [Arab... 59 5e-08
>ref|NP_200787.1| putative protein; protein id: At5g59790.1, supported by cDNA:
gi_20260479 [Arabidopsis thaliana]
gi|9757899|dbj|BAB08346.1|
gb|AAC98451.1~gene_id:MMN10.1~similar to unknown protein
[Arabidopsis thaliana] gi|20260480|gb|AAM13138.1|
unknown protein [Arabidopsis thaliana]
Length = 423
Score = 99.4 bits (246), Expect = 5e-20
Identities = 59/118 (50%), Positives = 74/118 (62%), Gaps = 2/118 (1%)
Frame = -2
Query: 729 VSFKESGAGAGKDQGFSLVGHYKSRLPRGAGNHGGKEVGTLMEIPDLSRVRLEDKEYFSG 550
+SFKE G KDQG +L G + RGA ++G + V E+ RV+LEDKEYFSG
Sbjct: 306 MSFKECGPVLLKDQGLALNGRSGCTITRGAEDNGEERVDK--ELKSFGRVQLEDKEYFSG 363
Query: 549 SLIETQKVETPSLKRSNSYNADSGSRL--QMIEHEGEVVRAKCIPRKSKTLTTKKEEG 382
SLIET+K P+LKRS+SYNAD SR+ + E E VRAKCIPRK K + + G
Sbjct: 364 SLIETKKELVPALKRSSSYNADRCSRMGPTTEKDEEEAVRAKCIPRKPKPVAKRNNGG 421
>gb|AAL08561.1| auxin-regulated protein [Lycopersicon esculentum]
Length = 433
Score = 91.7 bits (226), Expect = 1e-17
Identities = 57/123 (46%), Positives = 80/123 (64%), Gaps = 4/123 (3%)
Frame = -2
Query: 732 AVSFKESGAGAGKDQGFSLVGHYKSRLPRG-AGNHGGKEV-GTLMEI-PDLSRVRLEDKE 562
++SFK+ G G GK+ GFSL+ YK+RL G N K+V ++E R++LEDKE
Sbjct: 306 SMSFKQCGPGYGKENGFSLISQYKNRLSHGRCTNQAVKDVESPIVEYHGSEERIKLEDKE 365
Query: 561 YFSGSLIETQKVET-PSLKRSNSYNADSGSRLQMIEHEGEVVRAKCIPRKSKTLTTKKEE 385
YFSGSLIE +K E P+LKRS+SYN + ++L++ E + E + KC RK K +T +EE
Sbjct: 366 YFSGSLIEMKKKEKFPALKRSSSYNVERSTKLELTEKQ-EEGKTKCYLRKQKNQST-REE 423
Query: 384 GTS 376
G S
Sbjct: 424 GDS 426
>dbj|BAB67886.1| P0031D11.20 [Oryza sativa (japonica cultivar-group)]
gi|21104614|dbj|BAB93206.1| P0408C03.4 [Oryza sativa
(japonica cultivar-group)]
Length = 411
Score = 65.5 bits (158), Expect = 8e-10
Identities = 47/123 (38%), Positives = 65/123 (52%), Gaps = 9/123 (7%)
Frame = -2
Query: 669 HYKSRLPRGAGNHGGKEVGTLMEIPDLSRVRLEDKEYFSGSLIETQK-------VETPSL 511
HY+ R PR T EIP+ + +EDKEYFSGSL+ET++ + L
Sbjct: 300 HYRPRPPRPP-----TLASTTTEIPNYRQKIVEDKEYFSGSLVETKRSSPADTSQDIAVL 354
Query: 510 KRSNSYNADSGSRLQMIEHEGEVV--RAKCIPRKSKTLTTKKEEGTSMDIVSRSQHGSKR 337
+RS+SYNAD R+Q +E E V +CIPR+ + KK+ G + Q+GSKR
Sbjct: 355 RRSSSYNAD---RVQKVEPSTEAVDMHDRCIPRRPR---GKKDGGAYLISGGNGQYGSKR 408
Query: 336 FDG 328
G
Sbjct: 409 HGG 411
>dbj|BAC42479.1| unknown protein [Arabidopsis thaliana] gi|28950915|gb|AAO63381.1|
At3g46110 [Arabidopsis thaliana]
Length = 343
Score = 65.1 bits (157), Expect = 1e-09
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 4/114 (3%)
Frame = -2
Query: 732 AVSFKESGAGAGKDQGFSLVGHYKSRLPRGAGNHGGKEVGTLMEIPDLSRVRLEDKEYFS 553
A+SFK+ G + G+ +S RG GN+ + E+ RV+LE+KEYFS
Sbjct: 235 AMSFKKCGPTL-------MNGNTRSTAVRGTGNYRLERAEK--ELKSFGRVKLEEKEYFS 285
Query: 552 GSLIE--TQKVETPSLKRSNSYNADSGSRLQMI-EHEG-EVVRAKCIPRKSKTL 403
GSLI+ ++K P+LKRS+SYN D SR+ + E EG E+ RA IPR ++
Sbjct: 286 GSLIDESSKKELVPALKRSSSYNIDRSSRMGLTKEKEGEELARANFIPRNPNSV 339
>ref|NP_190197.1| putative protein; protein id: At3g46110.1 [Arabidopsis thaliana]
gi|11357390|pir||T49252 hypothetical protein F12M12.80 -
Arabidopsis thaliana gi|7798999|emb|CAB90938.1| putative
protein [Arabidopsis thaliana]
Length = 340
Score = 59.3 bits (142), Expect = 5e-08
Identities = 43/112 (38%), Positives = 62/112 (54%), Gaps = 2/112 (1%)
Frame = -2
Query: 732 AVSFKESGAGAGKDQGFSLVGHYKSRLPRGAGNHGGKEVGTLMEIPDLSRVRLEDKEYFS 553
A+SFK+ G + G+ +S RG GN+ + E+ RV+LE+KEYFS
Sbjct: 235 AMSFKKCGPTL-------MNGNTRSTAVRGTGNYRLERAEK--ELKSFGRVKLEEKEYFS 285
Query: 552 GSLIE--TQKVETPSLKRSNSYNADSGSRLQMIEHEGEVVRAKCIPRKSKTL 403
GSLI+ ++K P+LKRS+SYN D + E E E+ RA IPR ++
Sbjct: 286 GSLIDESSKKELVPALKRSSSYNIDRMGLTKEKEGE-ELARANFIPRNPNSV 336
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,034,608
Number of Sequences: 1393205
Number of extensions: 12548552
Number of successful extensions: 34177
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 32855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34145
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
