Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004282A_C01 KMC004282A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190981.1| Machado-Joseph disease MJD1a -like protein; pro... 42 0.004
dbj|BAB92851.1| ataxin 3-like protein [Oryza sativa (japonica cu... 37 0.23
ref|NP_782284.1| hypothetical protein [Clostridium tetani E88] g... 35 0.66
gb|EAA28394.1| hypothetical protein [Neurospora crassa] 35 0.86
emb|CAD79688.1| related to vacuolar protein sorting-associated p... 35 0.86
>ref|NP_190981.1| Machado-Joseph disease MJD1a -like protein; protein id: At3g54130.1
[Arabidopsis thaliana] gi|29336976|sp|Q9M391|MJDL_ARATH
Machado-Joseph disease-like protein (MJD1a-like)
(Ataxin-3 homolog) gi|11358496|pir||T47572
Machado-Joseph disease MJD1a-like protein - Arabidopsis
thaliana gi|6822059|emb|CAB70987.1| Machado-Joseph
disease MJD1a-like protein [Arabidopsis thaliana]
Length = 280
Score = 42.4 bits (98), Expect = 0.004
Identities = 21/33 (63%), Positives = 25/33 (75%)
Frame = -1
Query: 569 EADMFSEMEDEDLKAAIAASLMDSAPAVTNAEA 471
E FSEMED+DLKAAIAASL+D++ A N A
Sbjct: 236 EVQAFSEMEDDDLKAAIAASLLDASAAEANLGA 268
>dbj|BAB92851.1| ataxin 3-like protein [Oryza sativa (japonica cultivar-group)]
Length = 336
Score = 36.6 bits (83), Expect = 0.23
Identities = 31/94 (32%), Positives = 45/94 (46%), Gaps = 1/94 (1%)
Frame = -1
Query: 569 EADMFSEMEDE-DLKAAIAASLMDSAPAVTNAEASSPQIGDQSSKQGATTVASPLKDQHN 393
E DM + ++E DL AAIAASLMD+ N A ++S Q A + S + +
Sbjct: 236 EMDMIAAQQEEADLNAAIAASLMDTGGPFANYAAH-----EESRSQDAFAIES-TSGEMS 289
Query: 392 KTVESIEAGVVLSDQSNKHGASMEAASSLQIDQN 291
K E G S+ S + ++E+AS QN
Sbjct: 290 KDGNLEEQGANKSETSEPNSDNIESASGSNPKQN 323
>ref|NP_782284.1| hypothetical protein [Clostridium tetani E88]
gi|28203780|gb|AAO36221.1| hypothetical protein
[Clostridium tetani E88]
Length = 207
Score = 35.0 bits (79), Expect = 0.66
Identities = 23/80 (28%), Positives = 37/80 (45%), Gaps = 11/80 (13%)
Frame = +3
Query: 189 KEQIEEQTLFSDGIFFILVFILRAISYRRCHFLVVLINLKRTSSFHRRPMFV-------- 344
KEQ+ + L D I++FI+ + Y C L + I + R SS+ + +
Sbjct: 104 KEQVLKNHLIIDYKLIIMIFIVNFLFYLMCFSLEIFIIILRKSSYEALQIGMIFFYIILA 163
Query: 345 ---ALITENYTSFNGFHCFV 395
++T +Y SFN F FV
Sbjct: 164 IRFGVVTASYYSFNNFVYFV 183
>gb|EAA28394.1| hypothetical protein [Neurospora crassa]
Length = 672
Score = 34.7 bits (78), Expect = 0.86
Identities = 21/48 (43%), Positives = 30/48 (61%)
Frame = -1
Query: 554 SEMEDEDLKAAIAASLMDSAPAVTNAEASSPQIGDQSSKQGATTVASP 411
+E EDEDLKAAIAASL D A+ + +Q+S G+++ A+P
Sbjct: 315 AEEEDEDLKAAIAASLADMEEQKKRHAAA---LKEQTSNVGSSSSAAP 359
>emb|CAD79688.1| related to vacuolar protein sorting-associated protein [Neurospora
crassa]
Length = 724
Score = 34.7 bits (78), Expect = 0.86
Identities = 21/48 (43%), Positives = 30/48 (61%)
Frame = -1
Query: 554 SEMEDEDLKAAIAASLMDSAPAVTNAEASSPQIGDQSSKQGATTVASP 411
+E EDEDLKAAIAASL D A+ + +Q+S G+++ A+P
Sbjct: 315 AEEEDEDLKAAIAASLADMEEQKKRHAAA---LKEQTSNVGSSSSAAP 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,531,639
Number of Sequences: 1393205
Number of extensions: 9450434
Number of successful extensions: 24029
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 23105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23982
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
