Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004281A_C01 KMC004281A_c01
(533 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181419.2| unknown protein; protein id: At2g38850.1 [Arabi... 86 3e-16
ref|NP_077334.1| notch gene homolog 2,; notch gene homolog 2 (Dr... 32 3.6
ref|NP_788912.1| CG33173-PA [Drosophila melanogaster] gi|2838162... 32 3.6
gb|AAO51556.1| similar to Plasmodium falciparum. Protein kinase,... 32 3.6
gb|EAA22916.1| erythrocyte membrane-associated giant protein ant... 32 3.6
>ref|NP_181419.2| unknown protein; protein id: At2g38850.1 [Arabidopsis thaliana]
Length = 181
Score = 85.9 bits (211), Expect = 3e-16
Identities = 35/56 (62%), Positives = 45/56 (79%)
Frame = -2
Query: 532 VYSPILDLDRWSIPLGVIVSFFILYWRCCGKRKHGSGWLLPLYYSHKNGPNRPSTD 365
VYSP+LDLDRW+IP+ I++ +LYWRC GKRKHG+ WLLPLY + KNG NR ++
Sbjct: 126 VYSPVLDLDRWAIPIVCIIALCVLYWRCYGKRKHGARWLLPLYNNQKNGRNRERSE 181
>ref|NP_077334.1| notch gene homolog 2,; notch gene homolog 2 (Drosophila) [Rattus
norvegicus] gi|20138817|sp|Q9QW30|NTC2_RAT Neurogenic
locus notch homolog protein 2 precursor (Notch 2)
gi|477495|pir||A49128 cell-fate determining gene Notch2
protein - rat gi|13162674|gb|AAK13558.1| NOTCH2 [Rattus
norvegicus]
Length = 2471
Score = 32.3 bits (72), Expect = 3.6
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Frame = +1
Query: 154 TKLH---KLWQRSNSITL*SPFYTLCNRRKGTRAPHTKKNKLARRNVIDEQHSHIFKASG 324
T LH ++ Q S + P+Y G ++ KK K+ARR++ DEQ I +
Sbjct: 1571 TLLHTNLRIKQDSQGALMVYPYY-------GEKSAAMKKQKVARRSLPDEQEQEIIGSKV 1623
Query: 325 WLQLNHHHGF*DLNLCWADLD 387
+L++++ D + C+ + D
Sbjct: 1624 FLEIDNRQCVQDSDQCFKNTD 1644
>ref|NP_788912.1| CG33173-PA [Drosophila melanogaster] gi|28381626|gb|AAO41659.1|
CG33173-PA [Drosophila melanogaster]
Length = 1812
Score = 32.3 bits (72), Expect = 3.6
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%)
Frame = -1
Query: 473 IFHTLLAVLWEKETWIWVAVTF--VLQP*KWSKSAQHRFKSQNP***FSCSQPLAL---- 312
IF TLLA+++E + W+A+ +L+ ++SA R K Q P FS + AL
Sbjct: 382 IFCTLLAMIFENNAYFWLAIRVKNLLKKYHATRSAVGRLKRQIPEVSFSKTSAEALIEFR 441
Query: 311 KMWECCSSITFLLASLFFFVCGARVPFLL 225
+W+ S+ T+++ + V V LL
Sbjct: 442 GVWQKYSNSTYVVQDITLNVYAGEVVALL 470
>gb|AAO51556.1| similar to Plasmodium falciparum. Protein kinase, putative
[Dictyostelium discoideum]
Length = 1918
Score = 32.3 bits (72), Expect = 3.6
Identities = 15/39 (38%), Positives = 25/39 (63%)
Frame = +2
Query: 5 INLYFLFLLYIDLSTCRYMIVAQHMYLNPIYSKTICKIM 121
+ L +L + +IDLST R ++V +H Y P SK I +++
Sbjct: 1798 LELKYLNIYFIDLSTNRILLVFKHGYDGPDKSKNILRVL 1836
>gb|EAA22916.1| erythrocyte membrane-associated giant protein antigen 332
[Plasmodium yoelii yoelii]
Length = 3404
Score = 32.3 bits (72), Expect = 3.6
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +1
Query: 106 HLQNNVIKTAKNIFECTKLHKLWQRSNSITL*SPFYTLCNRRKGTRAPHTKKNKLARRNV 285
HL+ N + K + L L RSN I+ + + + + + H KKNK +N
Sbjct: 260 HLRGNKLTNLKGLSVLKNLKVLDLRSNLISHPVQLFYILDNKNWLKKYHDKKNKNKNKNT 319
Query: 286 IDEQHSHIFK 315
SHI K
Sbjct: 320 YYSYFSHILK 329
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,164,192
Number of Sequences: 1393205
Number of extensions: 10764008
Number of successful extensions: 23574
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 22965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23568
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
