Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004280A_C01 KMC004280A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173827.1| putative glycosyl transferase; protein id: At1g... 114 7e-25
ref|NP_564983.1| expressed protein; protein id: At1g70090.1, sup... 110 1e-23
dbj|BAC43692.1| unknown protein [Arabidopsis thaliana] 107 2e-22
gb|AAM61338.1| putative glycosyl transferase [Arabidopsis thaliana] 107 2e-22
ref|NP_563925.1| glycosyltransferase family; protein id: At1g132... 107 2e-22
>ref|NP_173827.1| putative glycosyl transferase; protein id: At1g24170.1 [Arabidopsis
thaliana] gi|7484989|pir||T00647 glycosyl transferase
homolog F3I6.10 - Arabidopsis thaliana
gi|2829871|gb|AAC00579.1| Hypothetical protein
[Arabidopsis thaliana] gi|26453138|dbj|BAC43645.1|
putative glycosyl transferase [Arabidopsis thaliana]
Length = 393
Score = 114 bits (286), Expect = 7e-25
Identities = 50/64 (78%), Positives = 53/64 (82%)
Frame = -3
Query: 594 GLGGDNLNGVCRSLHPGPVSLLHWSGKGKPWVRLDNKQPCPLDRLWEPYDLYKPHQFHNQ 415
GLGGDN+ G CRSLHPGPVSLLHWSGKGKPWVRLD K+PCPLD LWEPYDLYK H+
Sbjct: 314 GLGGDNIRGSCRSLHPGPVSLLHWSGKGKPWVRLDEKRPCPLDHLWEPYDLYK-HKIERA 372
Query: 414 MHQS 403
QS
Sbjct: 373 KDQS 376
>ref|NP_564983.1| expressed protein; protein id: At1g70090.1, supported by cDNA:
gi_13878002, supported by cDNA: gi_17104732 [Arabidopsis
thaliana] gi|25349431|pir||F96723 hypothetical protein
F20P5.18 [imported] - Arabidopsis thaliana
gi|2194142|gb|AAB61117.1| ESTs
gb|N38288,gb|T43486,gb|AA395242 come from this gene.
[Arabidopsis thaliana]
gi|13878003|gb|AAK44079.1|AF370264_1 unknown protein
[Arabidopsis thaliana] gi|17104733|gb|AAL34255.1|
unknown protein [Arabidopsis thaliana]
Length = 390
Score = 110 bits (276), Expect = 1e-23
Identities = 51/70 (72%), Positives = 56/70 (79%), Gaps = 1/70 (1%)
Frame = -3
Query: 594 GLGGDNLNGVCRSLHPGPVSLLHWSGKGKPWVRLDNKQPCPLDRLWEPYDLYKPHQFHNQ 415
GLGGDN+ G CRSLH GPVSLLHWSGKGKPWVRLD K+PCPLD LWEPYDLY+ H+
Sbjct: 311 GLGGDNVRGSCRSLHKGPVSLLHWSGKGKPWVRLDEKRPCPLDHLWEPYDLYE-HKIERA 369
Query: 414 MHQS-WSFSS 388
QS + FSS
Sbjct: 370 KDQSLFGFSS 379
>dbj|BAC43692.1| unknown protein [Arabidopsis thaliana]
Length = 282
Score = 107 bits (266), Expect = 2e-22
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = -3
Query: 594 GLGGDNLNGVCRSLHPGPVSLLHWSGKGKPWVRLDNKQPCPLDRLWEPYDLYK 436
GLGGDNL G+CR+LHPGPVSLLHWSGKGKPW+RLD+++PCPLD LW PYDL++
Sbjct: 222 GLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFR 274
>gb|AAM61338.1| putative glycosyl transferase [Arabidopsis thaliana]
Length = 345
Score = 107 bits (266), Expect = 2e-22
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = -3
Query: 594 GLGGDNLNGVCRSLHPGPVSLLHWSGKGKPWVRLDNKQPCPLDRLWEPYDLYK 436
GLGGDNL G+CR+LHPGPVSLLHWSGKGKPW+RLD+++PCPLD LW PYDL++
Sbjct: 285 GLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFR 337
>ref|NP_563925.1| glycosyltransferase family; protein id: At1g13250.1, supported by
cDNA: 117402. [Arabidopsis thaliana]
Length = 345
Score = 107 bits (266), Expect = 2e-22
Identities = 42/53 (79%), Positives = 50/53 (94%)
Frame = -3
Query: 594 GLGGDNLNGVCRSLHPGPVSLLHWSGKGKPWVRLDNKQPCPLDRLWEPYDLYK 436
GLGGDNL G+CR+LHPGPVSLLHWSGKGKPW+RLD+++PCPLD LW PYDL++
Sbjct: 285 GLGGDNLEGLCRNLHPGPVSLLHWSGKGKPWLRLDSRRPCPLDSLWAPYDLFR 337
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 585,138,056
Number of Sequences: 1393205
Number of extensions: 14232990
Number of successful extensions: 113264
Number of sequences better than 10.0: 1121
Number of HSP's better than 10.0 without gapping: 55191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85959
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
