Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004279A_C01 KMC004279A_c01
(455 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197108.1| UVB-resistance protein-like; protein id: At5g16... 120 7e-27
gb|AAM61698.1| UVB-resistance protein-like [Arabidopsis thaliana] 120 7e-27
ref|NP_186900.1| hypothetical protein; protein id: At3g02510.1 [... 105 2e-22
ref|NP_003913.1| guanine nucleotide exchange factor p532 [Homo s... 42 0.003
ref|NP_565144.1| expressed protein; protein id: At1g76950.1, sup... 40 0.015
>ref|NP_197108.1| UVB-resistance protein-like; protein id: At5g16040.1, supported by
cDNA: 13316. [Arabidopsis thaliana]
gi|11358914|pir||T51387 UVB-resistance protein-like -
Arabidopsis thaliana gi|9755650|emb|CAC01803.1|
UVB-resistance protein-like [Arabidopsis thaliana]
Length = 396
Score = 120 bits (301), Expect = 7e-27
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 2/77 (2%)
Frame = -3
Query: 453 DGRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSG--NEADEGHWISKLVACGG 280
DGR+FSFGRGDHGRLGYGRKVTTGQP+E+PI+IPPP+ +E D+G WI+K VACGG
Sbjct: 320 DGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNHTDEEDDGKWIAKHVACGG 379
Query: 279 RHTLAIVEWKVDEPQVD 229
RHTLAIVEWK D+ + +
Sbjct: 380 RHTLAIVEWKYDQEETE 396
Score = 39.7 bits (91), Expect = 0.015
Identities = 19/64 (29%), Positives = 37/64 (57%)
Frame = -3
Query: 453 DGRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSGNEADEGHWISKLVACGGRH 274
+G ++ +GRG+HGRLG+G + + + +N+ L+G + + V+CGG H
Sbjct: 266 EGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNL-----LAGEDIIQ-------VSCGGTH 313
Query: 273 TLAI 262
++A+
Sbjct: 314 SVAL 317
>gb|AAM61698.1| UVB-resistance protein-like [Arabidopsis thaliana]
Length = 396
Score = 120 bits (301), Expect = 7e-27
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 2/77 (2%)
Frame = -3
Query: 453 DGRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSG--NEADEGHWISKLVACGG 280
DGR+FSFGRGDHGRLGYGRKVTTGQP+E+PI+IPPP+ +E D+G WI+K VACGG
Sbjct: 320 DGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNHTDEEDDGKWIAKHVACGG 379
Query: 279 RHTLAIVEWKVDEPQVD 229
RHTLAIVEWK D+ + +
Sbjct: 380 RHTLAIVEWKYDQEETE 396
Score = 40.8 bits (94), Expect = 0.007
Identities = 18/64 (28%), Positives = 36/64 (56%)
Frame = -3
Query: 453 DGRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSGNEADEGHWISKLVACGGRH 274
+G ++ +GRG+HGRLG+G + + + +N+ P +++ V+CGG H
Sbjct: 266 EGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLPGEDII------------QVSCGGTH 313
Query: 273 TLAI 262
++A+
Sbjct: 314 SVAL 317
>ref|NP_186900.1| hypothetical protein; protein id: At3g02510.1 [Arabidopsis
thaliana] gi|6957714|gb|AAF32458.1| hypothetical protein
[Arabidopsis thaliana]
Length = 314
Score = 105 bits (262), Expect = 2e-22
Identities = 47/70 (67%), Positives = 56/70 (79%), Gaps = 2/70 (2%)
Frame = -3
Query: 444 MFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSG--NEADEGHWISKLVACGGRHT 271
+ FGRGDHGRLGYGRKVTTGQP+E+PI IPPP+ +E +EG W +K +ACGGRHT
Sbjct: 244 IIQFGRGDHGRLGYGRKVTTGQPLELPIKIPPPEGSFNHTDEEEEGKWSAKSIACGGRHT 303
Query: 270 LAIVEWKVDE 241
LAIVEWK D+
Sbjct: 304 LAIVEWKSDD 313
>ref|NP_003913.1| guanine nucleotide exchange factor p532 [Homo sapiens]
gi|7460242|pir||S71752 giant protein p619 - human
gi|1477565|gb|AAD12586.1| p532 [Homo sapiens]
Length = 4861
Score = 42.0 bits (97), Expect = 0.003
Identities = 26/64 (40%), Positives = 33/64 (50%)
Frame = -3
Query: 453 DGRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSGNEADEGHWISKLVACGGRH 274
DG++F+FG GD+GRLG G P V A EG+ I + VACG H
Sbjct: 4152 DGKLFTFGNGDYGRLGLGNTSNKKLPERV-------------TALEGYQIGQ-VACGLNH 4197
Query: 273 TLAI 262
TLA+
Sbjct: 4198 TLAV 4201
Score = 33.1 bits (74), Expect = 1.4
Identities = 21/69 (30%), Positives = 32/69 (45%), Gaps = 3/69 (4%)
Frame = -3
Query: 453 DGRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSGNEADEGHWISKLVAC---G 283
+G +FS+G GD+G+LG+G T P + +G K+V C G
Sbjct: 476 EGEVFSWGDGDYGKLGHGNSSTQKYP----------------KLIQGPLQGKVVVCVSAG 519
Query: 282 GRHTLAIVE 256
RH+ A+ E
Sbjct: 520 YRHSAAVTE 528
Score = 32.7 bits (73), Expect = 1.8
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = -3
Query: 453 DGRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSGNEADEGHWISKLVACGGRH 274
DG ++++G GD GRLG+G + NIP N + V+CG H
Sbjct: 529 DGELYTWGEGDFGRLGHGDSNSR--------NIPTLVKDISNVGE--------VSCGSSH 572
Query: 273 TLAI 262
T+A+
Sbjct: 573 TIAL 576
Score = 31.6 bits (70), Expect = 4.0
Identities = 17/63 (26%), Positives = 32/63 (49%)
Frame = -3
Query: 450 GRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSGNEADEGHWISKLVACGGRHT 271
G +FS+G GD+G+LG+G +P ++ + L G E + ++CG +H+
Sbjct: 4101 GEVFSWGDGDYGKLGHGNSDRQRRPRQI-------EALQGEEVVQ-------MSCGFKHS 4146
Query: 270 LAI 262
+
Sbjct: 4147 AVV 4149
>ref|NP_565144.1| expressed protein; protein id: At1g76950.1, supported by cDNA:
gi_15811366, supported by cDNA: gi_18087540 [Arabidopsis
thaliana] gi|15811367|gb|AAL08940.1| zinc finger protein
[Arabidopsis thaliana]
Length = 1103
Score = 39.7 bits (91), Expect = 0.015
Identities = 30/81 (37%), Positives = 41/81 (50%)
Frame = -3
Query: 450 GRMFSFGRGDHGRLGYGRKVTTGQPIEVPINIPPPQNLSGNEADEGHWISKLVACGGRHT 271
GR+F+FG G G LG+G K T P EV ++LSG + V+CG HT
Sbjct: 408 GRLFTFGDGTFGVLGHGDKETVQYPREV-------ESLSGLR-------TIAVSCGVWHT 453
Query: 270 LAIVEWKVDEPQVDS*IETGK 208
A+VE V + S + +GK
Sbjct: 454 AAVVEIIVTQSNSSS-VSSGK 473
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,145,428
Number of Sequences: 1393205
Number of extensions: 8634183
Number of successful extensions: 22194
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 21152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22098
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11413361193
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
