Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004278A_C01 KMC004278A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199941.1| DEAD-box protein abstrakt, putative; protein id... 219 2e-56
ref|NP_195063.1| DEAD-box protein abstrakt, putative; protein id... 200 9e-51
ref|NP_703620.1| RNA helicase-1 [Plasmodium falciparum 3D7] gi|2... 130 9e-30
gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii] 130 1e-29
dbj|BAA91585.1| unnamed protein product [Homo sapiens] 127 8e-29
>ref|NP_199941.1| DEAD-box protein abstrakt, putative; protein id: At5g51280.1
[Arabidopsis thaliana] gi|8843865|dbj|BAA97391.1|
DEAD-box protein abstrakt [Arabidopsis thaliana]
Length = 591
Score = 219 bits (558), Expect = 2e-56
Identities = 104/116 (89%), Positives = 110/116 (94%)
Frame = -2
Query: 521 AEIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPM 342
AEIENYVHRIGRTGRCGKTGIATTFINKNQS TTLLDLKHLLQEAKQRIPPVLAEL+DPM
Sbjct: 476 AEIENYVHRIGRTGRCGKTGIATTFINKNQSETTLLDLKHLLQEAKQRIPPVLAELNDPM 535
Query: 341 EDNEAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGYRGEI 174
E+ E I + SGVKGCAYCGGLGHRIRDCPKLEHQKS+AI+N+R DYFGSGGYRGEI
Sbjct: 536 EEAETIANASGVKGCAYCGGLGHRIRDCPKLEHQKSVAISNSRKDYFGSGGYRGEI 591
>ref|NP_195063.1| DEAD-box protein abstrakt, putative; protein id: At4g33370.1
[Arabidopsis thaliana] gi|7436451|pir||T05988
hypothetical protein F17M5.130 - Arabidopsis thaliana
gi|4490304|emb|CAB38795.1| putative protein [Arabidopsis
thaliana] gi|7270285|emb|CAB80054.1| putative protein
[Arabidopsis thaliana]
Length = 542
Score = 200 bits (508), Expect = 9e-51
Identities = 94/115 (81%), Positives = 103/115 (88%)
Frame = -2
Query: 518 EIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPME 339
EIENYVHRIGRTGRCGKTGIATTFINKNQS TLLDLKHLLQEAKQRIPPVLAEL+ PME
Sbjct: 428 EIENYVHRIGRTGRCGKTGIATTFINKNQSEITLLDLKHLLQEAKQRIPPVLAELNGPME 487
Query: 338 DNEAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGYRGEI 174
+ E I + SGVKGCAYCGGLGHRI CPK EHQKS+AI+++R D+FGS GYRGE+
Sbjct: 488 ETETIANASGVKGCAYCGGLGHRILQCPKFEHQKSVAISSSRKDHFGSDGYRGEV 542
>ref|NP_703620.1| RNA helicase-1 [Plasmodium falciparum 3D7]
gi|23504859|emb|CAD51640.1| RNA helicase-1 [Plasmodium
falciparum 3D7]
Length = 665
Score = 130 bits (327), Expect = 9e-30
Identities = 68/111 (61%), Positives = 77/111 (69%)
Frame = -2
Query: 518 EIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPME 339
+IENYVHRIGRTGRCGKTGIATTFINKNQ LLDLK LL EAKQ+IPP L E+ D
Sbjct: 548 DIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAKQKIPPFL-EMLDSKG 606
Query: 338 DNEAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIANNRHDYFGSGGY 186
N + +I GVKGC+YCGGLGHRI C KLE Q++ D + Y
Sbjct: 607 LN--LKEIGGVKGCSYCGGLGHRITQCSKLESQRNKQTLVTNKDILSNNKY 655
>gb|EAA20577.1| RNA helicase-1 [Plasmodium yoelii yoelii]
Length = 654
Score = 130 bits (326), Expect = 1e-29
Identities = 72/123 (58%), Positives = 82/123 (66%), Gaps = 9/123 (7%)
Frame = -2
Query: 518 EIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPME 339
+IENYVHRIGRTGRCGKTGIATTFINKNQ LLDLK LL EAKQ+IPP L E+ D
Sbjct: 536 DIENYVHRIGRTGRCGKTGIATTFINKNQEEAILLDLKALLIEAKQKIPPFL-EMLDSKG 594
Query: 338 DNEAITDISGVKGCAYCGGLGHRIRDCPKLE---------HQKSMAIANNRHDYFGSGGY 186
N + +I GVKGC+YCGGLGHRI C KLE QK + NN+ + GY
Sbjct: 595 IN--LQEIGGVKGCSYCGGLGHRITQCSKLETQTTKQKSSRQKDILSGNNK--FNNMNGY 650
Query: 185 RGE 177
G+
Sbjct: 651 TGD 653
>dbj|BAA91585.1| unnamed protein product [Homo sapiens]
Length = 622
Score = 127 bits (319), Expect = 8e-29
Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Frame = -2
Query: 518 EIENYVHRIGRTGRCGKTGIATTFINKNQSPTTLLDLKHLLQEAKQRIPPVLAELSDPME 339
EIENYVHRIGRTGR G TGIATTFINK + L+DLK LL EAKQ++PPVL L
Sbjct: 512 EIENYVHRIGRTGRSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC--- 568
Query: 338 DNEAITDISGVKGCAYCGGLGHRIRDCPKLEHQKSMAIAN-NRHDY 204
+E++ DI G +GCA+CGGLGHRI DCPKLE ++ ++N R DY
Sbjct: 569 GDESMLDIGGERGCAFCGGLGHRITDCPKLEAMQTKQVSNIGRKDY 614
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,675,141
Number of Sequences: 1393205
Number of extensions: 10054584
Number of successful extensions: 29112
Number of sequences better than 10.0: 1099
Number of HSP's better than 10.0 without gapping: 27222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29071
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
