Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004276A_C01 KMC004276A_c01
(551 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL50061.1| At1g72790/F28P22_2 [Arabidopsis thaliana] gi|1954... 106 2e-22
ref|NP_177422.1| unknown protein; protein id: At1g72790.1, suppo... 106 2e-22
gb|AAM13859.1| unknown protein [Arabidopsis thaliana] 101 5e-21
ref|NP_200517.1| unknown protein; protein id: At5g57070.1 [Arabi... 77 2e-13
dbj|BAC01231.1| OSJNBb0024F06.8 [Oryza sativa (japonica cultivar... 61 1e-08
>gb|AAL50061.1| At1g72790/F28P22_2 [Arabidopsis thaliana]
gi|19548027|gb|AAL87377.1| At1g72790/F28P22_2
[Arabidopsis thaliana]
Length = 561
Score = 106 bits (264), Expect = 2e-22
Identities = 54/97 (55%), Positives = 66/97 (67%), Gaps = 3/97 (3%)
Frame = -3
Query: 546 PPPPPPPPFKMPVWKFRVQGDFVRIDS---IKSSFPDSDEGVDSATGEDGEIQLFYASPD 376
PPPPPPPPFKMP WKF +GD+VR+ S I S PD + SA ++ +F SPD
Sbjct: 450 PPPPPPPPFKMPAWKFVKRGDYVRMASDISISSDEPDDPDVAQSAGSKEAAGSMFCPSPD 509
Query: 375 VDSKADNFIERFRAGLRIEKMNSTKEKQGLGKSNLWP 265
VD+KAD+FI RFRAGL++EKMNS K G+SNL P
Sbjct: 510 VDTKADDFIARFRAGLKLEKMNSVKR----GRSNLGP 542
Score = 31.2 bits (69), Expect = 8.7
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 549 PPPPPPPPPF 520
PPPPPPPPPF
Sbjct: 366 PPPPPPPPPF 375
>ref|NP_177422.1| unknown protein; protein id: At1g72790.1, supported by cDNA:
gi_17979445, supported by cDNA: gi_19548026 [Arabidopsis
thaliana] gi|25406210|pir||G96752 unknown protein
F28P22.2 [imported] - Arabidopsis thaliana
gi|12323765|gb|AAG51845.1|AC010926_8 unknown protein;
15669-13984 [Arabidopsis thaliana]
gi|24030251|gb|AAN41301.1| unknown protein [Arabidopsis
thaliana]
Length = 561
Score = 106 bits (264), Expect = 2e-22
Identities = 54/97 (55%), Positives = 66/97 (67%), Gaps = 3/97 (3%)
Frame = -3
Query: 546 PPPPPPPPFKMPVWKFRVQGDFVRIDS---IKSSFPDSDEGVDSATGEDGEIQLFYASPD 376
PPPPPPPPFKMP WKF +GD+VR+ S I S PD + SA ++ +F SPD
Sbjct: 450 PPPPPPPPFKMPAWKFVKRGDYVRMASDISISSDEPDDPDVAQSAGSKEAAGSMFCPSPD 509
Query: 375 VDSKADNFIERFRAGLRIEKMNSTKEKQGLGKSNLWP 265
VD+KAD+FI RFRAGL++EKMNS K G+SNL P
Sbjct: 510 VDTKADDFIARFRAGLKLEKMNSVKR----GRSNLGP 542
Score = 31.2 bits (69), Expect = 8.7
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 549 PPPPPPPPPF 520
PPPPPPPPPF
Sbjct: 366 PPPPPPPPPF 375
>gb|AAM13859.1| unknown protein [Arabidopsis thaliana]
Length = 535
Score = 101 bits (252), Expect = 5e-21
Identities = 49/85 (57%), Positives = 60/85 (69%), Gaps = 3/85 (3%)
Frame = -3
Query: 546 PPPPPPPPFKMPVWKFRVQGDFVRIDS---IKSSFPDSDEGVDSATGEDGEIQLFYASPD 376
PPPPPPPPFKMP WKF +GD+VR+ S I S PD + SA ++ +F SPD
Sbjct: 450 PPPPPPPPFKMPAWKFVKRGDYVRMASDISISSDEPDDPDVAQSAGSKEAAGSMFCPSPD 509
Query: 375 VDSKADNFIERFRAGLRIEKMNSTK 301
VD+KAD+FI RFRAGL++EKMNS K
Sbjct: 510 VDTKADDFIARFRAGLKLEKMNSVK 534
Score = 31.2 bits (69), Expect = 8.7
Identities = 10/10 (100%), Positives = 10/10 (100%)
Frame = -3
Query: 549 PPPPPPPPPF 520
PPPPPPPPPF
Sbjct: 366 PPPPPPPPPF 375
>ref|NP_200517.1| unknown protein; protein id: At5g57070.1 [Arabidopsis thaliana]
gi|8843809|dbj|BAA97357.1|
gb|AAF21150.1~gene_id:MUL3.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 607
Score = 76.6 bits (187), Expect = 2e-13
Identities = 47/118 (39%), Positives = 61/118 (50%), Gaps = 18/118 (15%)
Frame = -3
Query: 546 PPPPPPPPFKMPVWKFRVQGDFVRIDSIKSS-----------------FPDSDEGVDS-A 421
PPPPPPPPF++P K+ V GDF +I S +SS SD GV++ A
Sbjct: 473 PPPPPPPPFRVPPLKYVVSGDFAKIRSNQSSRCSSPEREVFDIGWGLELTQSDGGVETKA 532
Query: 420 TGEDGEIQLFYASPDVDSKADNFIERFRAGLRIEKMNSTKEKQGLGKSNLWPGLS*IG 247
G + F SPDVD+KADNFI R R R++K+NS K S + + IG
Sbjct: 533 AVSGGGMPGFCPSPDVDTKADNFIARLRDEWRLDKINSVNRKSKDSSSKVTGNIGIIG 590
Score = 32.0 bits (71), Expect = 5.1
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = -3
Query: 549 PPPPPPPPPFKMP 511
PPPPPPPPP ++P
Sbjct: 252 PPPPPPPPPVEVP 264
>dbj|BAC01231.1| OSJNBb0024F06.8 [Oryza sativa (japonica cultivar-group)]
Length = 812
Score = 60.8 bits (146), Expect = 1e-08
Identities = 36/85 (42%), Positives = 45/85 (52%)
Frame = -3
Query: 549 PPPPPPPPPFKMPVWKFRVQGDFVRIDSIKSSFPDSDEGVDSATGEDGEIQLFYASPDVD 370
PPPPPPPPP +G+ +E S T + ASPDV+
Sbjct: 698 PPPPPPPPPMS--------EGE--------------EEAPPSVTASPAPA--YCASPDVN 733
Query: 369 SKADNFIERFRAGLRIEKMNSTKEK 295
+KAD FIERFRAGL +EK+NS +EK
Sbjct: 734 AKADKFIERFRAGLTLEKINSYREK 758
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,527,432
Number of Sequences: 1393205
Number of extensions: 10555759
Number of successful extensions: 151355
Number of sequences better than 10.0: 222
Number of HSP's better than 10.0 without gapping: 54612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108133
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
