Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004274A_C01 KMC004274A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201231.1| phi-1-like protein; protein id: At5g64260.1, su... 157 5e-38
dbj|BAA33810.1| phi-1 [Nicotiana tabacum] 122 1e-27
ref|NP_196506.1| putative protein; protein id: At5g09440.1, supp... 122 2e-27
ref|NP_192634.1| putative phi-1-like phosphate-induced protein; ... 115 2e-25
gb|AAM64992.1| putative phi-1-like phosphate-induced protein [Ar... 115 2e-25
>ref|NP_201231.1| phi-1-like protein; protein id: At5g64260.1, supported by cDNA:
37357., supported by cDNA: gi_11908087, supported by
cDNA: gi_12642895, supported by cDNA: gi_14190476,
supported by cDNA: gi_16323269 [Arabidopsis thaliana]
gi|11908088|gb|AAG41473.1|AF326891_1 putative phi-1
protein [Arabidopsis thaliana]
gi|12642896|gb|AAK00390.1|AF339708_1 putative phi-1
protein [Arabidopsis thaliana]
gi|14190477|gb|AAK55719.1|AF380638_1 AT5g64260/MSJ1_10
[Arabidopsis thaliana] gi|16323270|gb|AAL15369.1|
AT5g64260/MSJ1_10 [Arabidopsis thaliana]
gi|21593241|gb|AAM65190.1| phi-1-like protein
[Arabidopsis thaliana]
Length = 305
Score = 157 bits (397), Expect = 5e-38
Identities = 87/149 (58%), Positives = 106/149 (70%), Gaps = 5/149 (3%)
Frame = +3
Query: 39 SNYHHATAFVVLLL-CGAASAALVEQQPLVLKYHNGELLKGRITVNLFWYGSFTPIQRSI 215
SNY A + G ++AALVE+QPLV+KYHNG LLKG ITVNL WYG FTPIQRS+
Sbjct: 3 SNYRFAIFLTLFFATAGFSAAALVEEQPLVMKYHNGVLLKGNITVNLVWYGKFTPIQRSV 62
Query: 216 IVDFINSLTT---TPGAPLPSVASWWKTTENYKLGSGSSALVVGKQTIHPSYTLGKSLQQ 386
IVDFI+SL + A +PSVASWWKTTE YK GSS LVVGKQ + +Y LGKSL+
Sbjct: 63 IVDFIHSLNSKDVASSAAVPSVASWWKTTEKYK--GGSSTLVVGKQLLLENYPLGKSLKN 120
Query: 387 THLVSLASTFN-DLAAINVILTAKDVAVD 470
+L +L++ N L +I V+LTAKDV V+
Sbjct: 121 PYLRALSTKLNGGLRSITVVLTAKDVTVE 149
>dbj|BAA33810.1| phi-1 [Nicotiana tabacum]
Length = 313
Score = 122 bits (307), Expect = 1e-27
Identities = 71/146 (48%), Positives = 92/146 (62%), Gaps = 10/146 (6%)
Frame = +3
Query: 63 FVVLLLCGAASA-----ALVEQ-QPLVLKYHNGELLKGRITVNLFWYGSFTPIQRSIIVD 224
F+V+ C A ALV++ + +L+YH G LL G+I+VNL WYG F P QR+I+ D
Sbjct: 11 FLVISFCNVCFASRKLTALVQEPENQLLQYHKGALLFGKISVNLIWYGKFKPSQRAIVSD 70
Query: 225 FINSL-TTTPGAPLPSVASWWKTTENY---KLGSGSSALVVGKQTIHPSYTLGKSLQQTH 392
FI SL ++TP PSVA WWKTTE Y S +L +GKQ + +Y+LGKSL Q
Sbjct: 71 FITSLSSSTPSKTDPSVAKWWKTTEKYYHLANSKKSLSLYLGKQVLVENYSLGKSLTQKQ 130
Query: 393 LVSLASTFNDLAAINVILTAKDVAVD 470
+V LAS AIN++LTA DVAVD
Sbjct: 131 IVQLASKGEQKDAINIVLTASDVAVD 156
>ref|NP_196506.1| putative protein; protein id: At5g09440.1, supported by cDNA:
38576., supported by cDNA: gi_17473690, supported by
cDNA: gi_20148462 [Arabidopsis thaliana]
gi|9955531|emb|CAC05470.1| putative protein [Arabidopsis
thaliana] gi|17473691|gb|AAL38302.1| putative protein
[Arabidopsis thaliana] gi|20148463|gb|AAM10122.1|
putative protein [Arabidopsis thaliana]
gi|21593400|gb|AAM65367.1| phi-1-like protein
[Arabidopsis thaliana]
Length = 278
Score = 122 bits (306), Expect = 2e-27
Identities = 70/144 (48%), Positives = 90/144 (61%), Gaps = 2/144 (1%)
Frame = +3
Query: 45 YHHATAFVVLLLCGAASAALVEQQPLVLKYHNGELLKGRITVNLFWYGSFTPIQRSIIVD 224
Y++ A +++LL +P V L G IT+NL WYG FTPIQRSIIVD
Sbjct: 3 YNYRFAILLVLLSATVGFTAAALKPPV------RTLNGNITLNLIWYGKFTPIQRSIIVD 56
Query: 225 FINSLTTTPGAPLPSVASWWKTTENYKLGSGSSALVVGKQTIHPSYTLGKSLQQTHLVSL 404
FI S+++ A PSVASWWKTTE YK +G S LVVGKQ + +Y LGKSL+ +L +L
Sbjct: 57 FIRSISSVTAAKGPSVASWWKTTEKYK--TGVSTLVVGKQLLLENYPLGKSLKSPYLRAL 114
Query: 405 ASTFN--DLAAINVILTAKDVAVD 470
+S N +I V+LTAKDV V+
Sbjct: 115 SSKLNAGGARSITVVLTAKDVTVE 138
>ref|NP_192634.1| putative phi-1-like phosphate-induced protein; protein id:
At4g08950.1, supported by cDNA: 3552., supported by
cDNA: gi_15450811, supported by cDNA: gi_20259893,
supported by cDNA: gi_20271141 [Arabidopsis thaliana]
gi|25371901|pir||C85090 probable phi-1-like
phosphate-induced protein [imported] - Arabidopsis
thaliana gi|4325369|gb|AAD17365.1| T3H13.3 gene product
[Arabidopsis thaliana] gi|7267537|emb|CAB78019.1|
putative phi-1-like phosphate-induced protein
[Arabidopsis thaliana] gi|15450812|gb|AAK96677.1|
Unknown protein [Arabidopsis thaliana]
gi|20259894|gb|AAM13294.1| unknown protein [Arabidopsis
thaliana] gi|20271142|gb|AAM18526.1|AF496655_1 cell
cycle-related protein [Arabidopsis thaliana]
Length = 314
Score = 115 bits (289), Expect = 2e-25
Identities = 72/148 (48%), Positives = 92/148 (61%), Gaps = 13/148 (8%)
Frame = +3
Query: 63 FVVLLLCGAASAALVEQQP---LVLKYHNGELLKGRITVNLFWYGSFTPIQRSIIVDFIN 233
F+ LL ++ L Q+P +LKYH G LL G+I+VNL WYG F P QR+II DFI
Sbjct: 11 FLSLLQISVSARNLASQEPNQFQLLKYHKGALLSGKISVNLIWYGKFKPSQRAIISDFIT 70
Query: 234 SLT-TTPGAPL---PSVASWWKTTEN-YKLGSGSS-----ALVVGKQTIHPSYTLGKSLQ 383
SLT T+P + PSVA+WWKTTE YKL + S +L +GKQ I S +LGKSL
Sbjct: 71 SLTHTSPTSKTLHQPSVATWWKTTEKYYKLATPSKNSSPLSLTLGKQIIDESCSLGKSLT 130
Query: 384 QTHLVSLASTFNDLAAINVILTAKDVAV 467
+ +LAS + AINV+LT+ DV V
Sbjct: 131 DKKIQTLASKGDQRNAINVVLTSADVTV 158
>gb|AAM64992.1| putative phi-1-like phosphate-induced protein [Arabidopsis
thaliana]
Length = 314
Score = 115 bits (289), Expect = 2e-25
Identities = 72/148 (48%), Positives = 92/148 (61%), Gaps = 13/148 (8%)
Frame = +3
Query: 63 FVVLLLCGAASAALVEQQP---LVLKYHNGELLKGRITVNLFWYGSFTPIQRSIIVDFIN 233
F+ LL ++ L Q+P +LKYH G LL G+I+VNL WYG F P QR+II DFI
Sbjct: 11 FLSLLQISVSARNLASQEPNQFQLLKYHKGALLSGKISVNLIWYGKFKPSQRAIISDFIT 70
Query: 234 SLT-TTPGAPL---PSVASWWKTTEN-YKLGSGSS-----ALVVGKQTIHPSYTLGKSLQ 383
SLT T+P + PSVA+WWKTTE YKL + S +L +GKQ I S +LGKSL
Sbjct: 71 SLTHTSPTSKTLHQPSVATWWKTTEKYYKLATPSKNSSPLSLTLGKQIIDESCSLGKSLT 130
Query: 384 QTHLVSLASTFNDLAAINVILTAKDVAV 467
+ +LAS + AINV+LT+ DV V
Sbjct: 131 DKKIQTLASKGDQRNAINVVLTSADVTV 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,600,141
Number of Sequences: 1393205
Number of extensions: 11034356
Number of successful extensions: 56822
Number of sequences better than 10.0: 390
Number of HSP's better than 10.0 without gapping: 43721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53080
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
