Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004271A_C01 KMC004271A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA96957.1| gene_id:MJB24.15~unknown protein [Arabidopsis th... 45 6e-04
ref|NP_568853.1| expressed protein; protein id: At5g57340.1, sup... 45 6e-04
gb|AAM75990.1|AF481102_26 ribosomal protein L31 [Candidatus Trem... 32 4.1
gb|EAA16316.1| guanylyl cyclase-related [Plasmodium yoelii yoelii] 32 5.3
ref|XP_220391.1| similar to hypothetical protein FLJ32191 [Homo ... 31 9.1
>dbj|BAA96957.1| gene_id:MJB24.15~unknown protein [Arabidopsis thaliana]
Length = 256
Score = 44.7 bits (104), Expect = 6e-04
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -2
Query: 418 FQSDNKVGDCSDPTTPMSSSSVT-FDQEKRGPHWLSQGLKL 299
+ + N + S P TPMSSSS T D+EK+ PHWL QGL +
Sbjct: 211 YNNSNNNQESSGPNTPMSSSSTTSLDREKKRPHWLFQGLSI 251
>ref|NP_568853.1| expressed protein; protein id: At5g57340.1, supported by cDNA:
gi_16226274, supported by cDNA: gi_19347951 [Arabidopsis
thaliana] gi|16226275|gb|AAL16121.1|AF428289_1
AT5g57340/MJB24_15 [Arabidopsis thaliana]
gi|19347952|gb|AAL86311.1| unknown protein [Arabidopsis
thaliana] gi|21689665|gb|AAM67454.1| unknown protein
[Arabidopsis thaliana]
Length = 238
Score = 44.7 bits (104), Expect = 6e-04
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = -2
Query: 418 FQSDNKVGDCSDPTTPMSSSSVT-FDQEKRGPHWLSQGLKL 299
+ + N + S P TPMSSSS T D+EK+ PHWL QGL +
Sbjct: 193 YNNSNNNQESSGPNTPMSSSSTTSLDREKKRPHWLFQGLSI 233
>gb|AAM75990.1|AF481102_26 ribosomal protein L31 [Candidatus Tremblaya princeps]
Length = 67
Score = 32.0 bits (71), Expect = 4.1
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 129 TRSAYLQKGSLRNGCISYPFIGIK*KTQTHEPYKLSGP 242
TRS KGS+ GC +YP + I+ + TH Y P
Sbjct: 22 TRSTLAPKGSINIGCAAYPMLKIEVTSSTHCAYARRRP 59
>gb|EAA16316.1| guanylyl cyclase-related [Plasmodium yoelii yoelii]
Length = 899
Score = 31.6 bits (70), Expect = 5.3
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Frame = +3
Query: 144 LQKGSLRN-----GCISYPFIGIK*KTQTHEPYKLSGPCRFERKDIKIL*NKSNYYLS 302
+QK S+ N CIS F IK K T K + +E+ D K+ NKSN+++S
Sbjct: 316 IQKFSIFNLFCICSCISKLFTWIKQKNTTIHKKKYTSNSVYEKDDRKLYHNKSNHFIS 373
>ref|XP_220391.1| similar to hypothetical protein FLJ32191 [Homo sapiens] [Rattus
norvegicus]
Length = 840
Score = 30.8 bits (68), Expect = 9.1
Identities = 21/73 (28%), Positives = 33/73 (44%)
Frame = -2
Query: 463 SSPIGKTREFNSSISFQSDNKVGDCSDPTTPMSSSSVTFDQEKRGPHWLSQGLKLK**FD 284
+ P+G T E S + S + GD + +V F QE+ G WLS + D
Sbjct: 27 AQPLGDTAETPSPVLNTSVLQTGDPGEDLVTFKEVAVLFTQEEWG--WLSSAQR-----D 79
Query: 283 LFHSILISFLSNL 245
L+ +++ SNL
Sbjct: 80 LYQDVMLENYSNL 92
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,687,935
Number of Sequences: 1393205
Number of extensions: 8580546
Number of successful extensions: 19973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19970
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
