Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004269A_C01 KMC004269A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198202.1| putative protein; protein id: At5g28500.1 [Arab... 89 4e-17
ref|NP_566230.1| expressed protein; protein id: At3g04550.1, sup... 88 9e-17
ref|XP_284044.1| hypothetical protein XP_284044 [Mus musculus] 47 1e-04
dbj|BAB03062.1| contains similarity to cell wall-plasma membrane... 44 0.002
gb|AAH42775.1| Unknown (protein for IMAGE:4987644) [Mus musculus... 43 0.003
>ref|NP_198202.1| putative protein; protein id: At5g28500.1 [Arabidopsis thaliana]
gi|9502165|gb|AAF88015.1| contains similarity to
Synechocystis sp. hypothetical protein (GB:D64004),
Brevibacterium linens elongation factor Tu (GB:X76863)
and Salmonella typhi and Salmonella enterica SpaO
(GB:U29363 and U29360) [Arabidopsis thaliana]
gi|23397267|gb|AAN31915.1| unknown protein [Arabidopsis
thaliana]
Length = 434
Score = 89.0 bits (219), Expect = 4e-17
Identities = 45/76 (59%), Positives = 60/76 (78%), Gaps = 1/76 (1%)
Frame = -1
Query: 574 KEEPILVVADRSKREVGADDGFYLVKVEDDGVGLKVERGLGLKERGVSESLGSVILVVRP 395
K E I+VV DR K+ V AD+G+Y + V D G +K++RGL LKE+GV+ESLG V+LVVRP
Sbjct: 361 KGEAIMVVIDREKKTVEADNGYYYLVVADGG--MKLDRGLVLKEKGVNESLGMVVLVVRP 418
Query: 394 PREEDD-GQLSDEDWD 350
PR++DD Q++DEDWD
Sbjct: 419 PRDDDDEWQINDEDWD 434
>ref|NP_566230.1| expressed protein; protein id: At3g04550.1, supported by cDNA:
gi_14334445, supported by cDNA: gi_17064727, supported
by cDNA: gi_17104784 [Arabidopsis thaliana]
gi|6175160|gb|AAF04886.1|AC011437_1 unknown protein
[Arabidopsis thaliana] gi|14334446|gb|AAK59421.1|
unknown protein [Arabidopsis thaliana]
gi|17064728|gb|AAL32518.1| Unknown protein [Arabidopsis
thaliana] gi|17104785|gb|AAL34281.1| unknown protein
[Arabidopsis thaliana] gi|21387089|gb|AAM47948.1|
unknown protein [Arabidopsis thaliana]
Length = 449
Score = 87.8 bits (216), Expect = 9e-17
Identities = 47/76 (61%), Positives = 57/76 (74%), Gaps = 1/76 (1%)
Frame = -1
Query: 574 KEEPILVVADRSKREVGADDGFYLVKVEDDGVGLKVERGLGLKERGVSESLGSVILVVRP 395
KEEP+LVVADR + V ADDG+YLV E+ GLK+E+G LK R V ESLG V+LVVRP
Sbjct: 377 KEEPLLVVADRVRNVVEADDGYYLVVAEN---GLKLEKGSDLKAREVKESLGMVVLVVRP 433
Query: 394 PREEDDG-QLSDEDWD 350
PRE+DD Q S ++WD
Sbjct: 434 PREDDDDWQTSHQNWD 449
>ref|XP_284044.1| hypothetical protein XP_284044 [Mus musculus]
Length = 205
Score = 47.4 bits (111), Expect = 1e-04
Identities = 21/48 (43%), Positives = 25/48 (51%)
Frame = +1
Query: 445 LSNPNPSPPSNQHHHPQP*PNKTHHQHPPPSYSDQPPPI*APPCTTGS 588
L NP+P+P N H HP P PN H HP P+ + PP P C S
Sbjct: 75 LPNPHPNPNPNPHPHPHPHPNPNPHPHPHPNANPHPP---RPTCEAAS 119
>dbj|BAB03062.1| contains similarity to cell wall-plasma membrane linker
protein~gene_id:MKA23.5 [Arabidopsis thaliana]
Length = 1480
Score = 43.5 bits (101), Expect = 0.002
Identities = 23/49 (46%), Positives = 29/49 (58%), Gaps = 2/49 (4%)
Frame = +1
Query: 451 NPNPSPPSNQHHHPQP*PNKTHHQHP-PPSYSDQP-PPI*APPCTTGSP 591
+P+P PP+ H HP+P P K HH HP PP+ P PP PP +T P
Sbjct: 130 HPHPKPPTKPHPHPKP-PTK-HHPHPKPPTIKPPPKPPSVKPPPSTPKP 176
Score = 37.4 bits (85), Expect = 0.14
Identities = 15/36 (41%), Positives = 20/36 (54%)
Frame = +1
Query: 451 NPNPSPPSNQHHHPQP*PNKTHHQHPPPSYSDQPPP 558
+P+P PP+ H HP+P P K H PP+ P P
Sbjct: 82 HPHPKPPTKPHPHPKP-PTKPHPHPKPPTIKPPPHP 116
Score = 33.9 bits (76), Expect = 1.6
Identities = 18/43 (41%), Positives = 19/43 (43%), Gaps = 3/43 (6%)
Frame = +1
Query: 454 PNPSPPSNQHHHPQP*PNKTHHQHPPPSYSDQP---PPI*APP 573
P+P PP N HP P P H HP P P PP PP
Sbjct: 120 PHPKPP-NVKPHPHPKPPTKPHPHPKPPTKHHPHPKPPTIKPP 161
Score = 33.1 bits (74), Expect = 2.7
Identities = 20/46 (43%), Positives = 23/46 (49%)
Frame = +1
Query: 454 PNPSPPSNQHHHPQP*PNKTHHQHPPPSYSDQPPPI*APPCTTGSP 591
P P PPS + P P K +PPPS + QPP PPCT P
Sbjct: 160 PPPKPPSVK---PPPSTPKPPTTNPPPS-TPQPPTHKPPPCTPTPP 201
Score = 33.1 bits (74), Expect = 2.7
Identities = 23/77 (29%), Positives = 25/77 (31%), Gaps = 11/77 (14%)
Frame = +1
Query: 376 HHPLLWEA*QPKLHSLNSH*HLFLSNPNPSPPSNQHH--------HPQP*PNKTHHQHPP 531
H P PK ++ H H P PP H HP P P H HP
Sbjct: 37 HKPPKHSVVPPKPPAVKPHPHPKPPTIKPPPPKRHPHPKPPTVKPHPHPKPPTKPHPHPK 96
Query: 532 PSYSDQP---PPI*APP 573
P P PP PP
Sbjct: 97 PPTKPHPHPKPPTIKPP 113
>gb|AAH42775.1| Unknown (protein for IMAGE:4987644) [Mus musculus]
gi|28385951|gb|AAH46539.1| Unknown (protein for
IMAGE:5066770) [Mus musculus]
Length = 214
Score = 43.1 bits (100), Expect = 0.003
Identities = 20/48 (41%), Positives = 25/48 (51%)
Frame = +1
Query: 445 LSNPNPSPPSNQHHHPQP*PNKTHHQHPPPSYSDQPPPI*APPCTTGS 588
L NPNP+P N + HP P PN H +P P+ + PP P C S
Sbjct: 84 LPNPNPNPNPNANPHPHPHPNPHPHPNPHPNANPHPP---RPTCEAAS 128
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,271,239
Number of Sequences: 1393205
Number of extensions: 12911563
Number of successful extensions: 76331
Number of sequences better than 10.0: 525
Number of HSP's better than 10.0 without gapping: 43951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65958
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
