Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004265A_C01 KMC004265A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA77395.1| SLL2-S9-protein [Brassica rapa] 168 5e-41
pir||T08201 S locus-linked protein SLL2 - rape gi|1518113|gb|AAB... 167 8e-41
gb|AAM65478.1| pheromone receptor, putative (AR401) [Arabidopsis... 162 3e-39
gb|AAO64803.1| At1g66680 [Arabidopsis thaliana] 160 1e-38
ref|NP_176841.1| pheromone receptor, putative (AR401); protein i... 160 1e-38
>dbj|BAA77395.1| SLL2-S9-protein [Brassica rapa]
Length = 337
Score = 168 bits (425), Expect = 5e-41
Identities = 84/113 (74%), Positives = 94/113 (82%), Gaps = 9/113 (7%)
Frame = -1
Query: 562 FQLVVDKGTLDAIGLHPDGSVKRMMYWDSVAKLVAPGGILVITSCNNTKDELVQEVESFN 383
F+LV+DKGTLDAIGLHPDG VKR+MYWDSV+KLVAPGGILVITSCNNTKDEL++EVE+FN
Sbjct: 225 FKLVMDKGTLDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNNTKDELLEEVENFN 284
Query: 382 QR---------NHAEESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAFLRK 251
R + A P F+Y+SHVRTYPTFMFGGSVGSRVATVAFLRK
Sbjct: 285 MRKSNLTGDVSSEAASGTDHPPFEYLSHVRTYPTFMFGGSVGSRVATVAFLRK 337
>pir||T08201 S locus-linked protein SLL2 - rape gi|1518113|gb|AAB49423.1| SLL2
Length = 337
Score = 167 bits (423), Expect = 8e-41
Identities = 84/113 (74%), Positives = 94/113 (82%), Gaps = 9/113 (7%)
Frame = -1
Query: 562 FQLVVDKGTLDAIGLHPDGSVKRMMYWDSVAKLVAPGGILVITSCNNTKDELVQEVESFN 383
F+LV+DKGTLDAIGLHPDG VKR+MYWDSV+KLVAPGGILVITSCNNTKDEL++EVE+FN
Sbjct: 225 FKLVMDKGTLDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNNTKDELLEEVENFN 284
Query: 382 QR---------NHAEESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAFLRK 251
R + A P F+Y+SHVRTYPTFMFGGSVGSRVATVAFLRK
Sbjct: 285 MRKSNLTGDVSSEAASGTDYPPFEYLSHVRTYPTFMFGGSVGSRVATVAFLRK 337
>gb|AAM65478.1| pheromone receptor, putative (AR401) [Arabidopsis thaliana]
Length = 358
Score = 162 bits (410), Expect = 3e-39
Identities = 84/123 (68%), Positives = 94/123 (76%), Gaps = 19/123 (15%)
Frame = -1
Query: 562 FQLVVDKGTLDAIGLHPDGSVKRMMYWDSVAKLVAPGGILVITSCNNTKDELVQEVESFN 383
F+LV+DKGTLDAIGLHPDG VKR+MYWDSV+KLVAPGGILVITSCN+TKDELV+EVE+FN
Sbjct: 236 FKLVMDKGTLDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNHTKDELVEEVENFN 295
Query: 382 QR-------------------NHAEESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAF 260
R + A P F+Y+SHVRTYPTFMFGGSVGSRVATVAF
Sbjct: 296 IRKSNLCRGDGNDANNVLSSGSEAASRIDQPPFEYLSHVRTYPTFMFGGSVGSRVATVAF 355
Query: 259 LRK 251
LRK
Sbjct: 356 LRK 358
>gb|AAO64803.1| At1g66680 [Arabidopsis thaliana]
Length = 263
Score = 160 bits (404), Expect = 1e-38
Identities = 83/123 (67%), Positives = 93/123 (75%), Gaps = 19/123 (15%)
Frame = -1
Query: 562 FQLVVDKGTLDAIGLHPDGSVKRMMYWDSVAKLVAPGGILVITSCNNTKDELVQEVESFN 383
F+LV+DKGTLDAIGLHPDG VKR+MYWDSV+KLVAPGGILVITSCN+TKDELV+EVE+FN
Sbjct: 141 FKLVMDKGTLDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNHTKDELVEEVENFN 200
Query: 382 QR-------------------NHAEESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAF 260
R + A P F+Y+SHVRTYPTFMF GSVGSRVATVAF
Sbjct: 201 IRKSNLCRGDGNDANNVLSSGSEAASRIDQPPFEYLSHVRTYPTFMFSGSVGSRVATVAF 260
Query: 259 LRK 251
LRK
Sbjct: 261 LRK 263
>ref|NP_176841.1| pheromone receptor, putative (AR401); protein id: At1g66680.1,
supported by cDNA: 3969., supported by cDNA: gi_1669600
[Arabidopsis thaliana]
gi|12597759|gb|AAG60072.1|AC013288_6 pheromone receptor,
putative (AR401) [Arabidopsis thaliana]
Length = 358
Score = 160 bits (404), Expect = 1e-38
Identities = 83/123 (67%), Positives = 93/123 (75%), Gaps = 19/123 (15%)
Frame = -1
Query: 562 FQLVVDKGTLDAIGLHPDGSVKRMMYWDSVAKLVAPGGILVITSCNNTKDELVQEVESFN 383
F+LV+DKGTLDAIGLHPDG VKR+MYWDSV+KLVAPGGILVITSCN+TKDELV+EVE+FN
Sbjct: 236 FKLVMDKGTLDAIGLHPDGPVKRVMYWDSVSKLVAPGGILVITSCNHTKDELVEEVENFN 295
Query: 382 QR-------------------NHAEESCRDPLFQYVSHVRTYPTFMFGGSVGSRVATVAF 260
R + A P F+Y+SHVRTYPTFMF GSVGSRVATVAF
Sbjct: 296 IRKSNLCRGDGNDANNVLSSGSEAASRIDQPPFEYLSHVRTYPTFMFSGSVGSRVATVAF 355
Query: 259 LRK 251
LRK
Sbjct: 356 LRK 358
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,626,532
Number of Sequences: 1393205
Number of extensions: 11816997
Number of successful extensions: 29648
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 28846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29613
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
