Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004263A_C01 KMC004263A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_705488.1| guanylyl cyclase [Plasmodium falciparum 3D7] gi... 33 2.9
emb|CAC05389.1| guanylyl cyclase enzyme [Plasmodium falciparum] 33 2.9
gb|ZP_00056939.1| hypothetical protein [Thermobifida fusca] 32 4.9
pir||T15653 hypothetical protein C27D6.2 - Caenorhabditis elegans 31 8.4
ref|NP_494963.1| Serpentine Receptor, class B (beta) SRB-3 (srb-... 31 8.4
>ref|NP_705488.1| guanylyl cyclase [Plasmodium falciparum 3D7]
gi|23615733|emb|CAD52725.1| guanylyl cyclase [Plasmodium
falciparum 3D7]
Length = 3127
Score = 32.7 bits (73), Expect = 2.9
Identities = 21/78 (26%), Positives = 35/78 (43%)
Frame = +1
Query: 301 NKNKKPPVDREKSTNRGIFLGPSSFAYSFTYNFGIHNCYLQSKKEGCTKL*NIY*RHKRI 480
NK + + E+ + L S YN+ H L+ KK TK+ N++ K
Sbjct: 2499 NKYHESEIMNEEDNKNMLNLTQSQIINKDKYNYFTHCPSLKKKKSVFTKINNLF---KNY 2555
Query: 481 ISNVEIGEEINFSTKEKF 534
++++ E+ FS K KF
Sbjct: 2556 FKSIDVHEKFGFSKKFKF 2573
>emb|CAC05389.1| guanylyl cyclase enzyme [Plasmodium falciparum]
Length = 3124
Score = 32.7 bits (73), Expect = 2.9
Identities = 21/78 (26%), Positives = 35/78 (43%)
Frame = +1
Query: 301 NKNKKPPVDREKSTNRGIFLGPSSFAYSFTYNFGIHNCYLQSKKEGCTKL*NIY*RHKRI 480
NK + + E+ + L S YN+ H L+ KK TK+ N++ K
Sbjct: 2496 NKYHESEIMNEEDNKNMLNLTQSQIINKDKYNYFTHCPSLKKKKSVFTKINNLF---KNY 2552
Query: 481 ISNVEIGEEINFSTKEKF 534
++++ E+ FS K KF
Sbjct: 2553 FKSIDVHEKFGFSKKFKF 2570
>gb|ZP_00056939.1| hypothetical protein [Thermobifida fusca]
Length = 548
Score = 32.0 bits (71), Expect = 4.9
Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Frame = -1
Query: 461 YMFHSFVQPSFLLCR*QLWIPKLYVNE*AKEEGPRNM-------PLFVDFSLSTGGFLFL 303
YM H + P LL L+ + + GPR P+F F+L GGF F
Sbjct: 211 YMLHILLLPGILLALIAAHFIILWYQKHTQYPGPRRTEKQVIGTPMFPGFALKAGGFFFF 270
Query: 302 FFLSIS 285
F +I+
Sbjct: 271 TFAAIT 276
>pir||T15653 hypothetical protein C27D6.2 - Caenorhabditis elegans
Length = 1363
Score = 31.2 bits (69), Expect = 8.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -2
Query: 352 CLCLLIFLCQ---PEVFCFCFFYQFLLGLF 272
CL ++ F+C CF FFYQFL+ F
Sbjct: 414 CLLIVYFICNLLFSMALCFAFFYQFLIPFF 443
>ref|NP_494963.1| Serpentine Receptor, class B (beta) SRB-3 (srb-3) [Caenorhabditis
elegans] gi|14573867|gb|AAK68209.1|U23179_8 Serpentine
receptor, class b (beta) protein 3 [Caenorhabditis
elegans] gi|1584518|prf||2123261Q chemosensory receptor
Length = 341
Score = 31.2 bits (69), Expect = 8.4
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Frame = -2
Query: 352 CLCLLIFLCQ---PEVFCFCFFYQFLLGLF 272
CL ++ F+C CF FFYQFL+ F
Sbjct: 58 CLLIVYFICNLLFSMALCFAFFYQFLIPFF 87
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,216,171
Number of Sequences: 1393205
Number of extensions: 9438531
Number of successful extensions: 23696
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23673
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
