Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004260A_C01 KMC004260A_c01
(581 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA31731.1| predicted protein [Neurospora crassa] gi|28950181... 41 0.012
ref|NP_173742.1| mak16-like protein-related; protein id: At1g232... 40 0.016
pir||H86366 protein F26F24.12 [imported] - Arabidopsis thaliana ... 39 0.062
ref|ZP_00072536.1| hypothetical protein [Trichodesmium erythraeu... 36 0.40
ref|NP_004485.1| hepatoma-derived growth factor (high-mobility g... 36 0.40
>gb|EAA31731.1| predicted protein [Neurospora crassa] gi|28950181|emb|CAD71049.1|
conserved hypothetical protein [Neurospora crassa]
Length = 1464
Score = 40.8 bits (94), Expect = 0.012
Identities = 26/66 (39%), Positives = 37/66 (55%)
Frame = -1
Query: 575 ESQGGDGDENENAGSTDDEEAEALDQRRARRKMTLASKRHEKDILDSKSKKKARVLVEVE 396
E GDGDE DD EAE + A KM A++R EK ++K K KAR +VE +
Sbjct: 991 EEAEGDGDEEMGDAGDDDHEAE--KAKSAFEKMKRAAER-EKRRKEAKKKSKAREMVEEQ 1047
Query: 395 HEDADE 378
E++++
Sbjct: 1048 AEESED 1053
>ref|NP_173742.1| mak16-like protein-related; protein id: At1g23280.1 [Arabidopsis
thaliana]
Length = 303
Score = 40.4 bits (93), Expect = 0.016
Identities = 24/65 (36%), Positives = 40/65 (60%)
Frame = -1
Query: 560 DGDENENAGSTDDEEAEALDQRRARRKMTLASKRHEKDILDSKSKKKARVLVEVEHEDAD 381
+GD++++ DDE+ + +++ K A K+ + + K+KKK RV+VEVE EDAD
Sbjct: 241 EGDDHDS----DDEDDDDAEEQVVIHKKGRALKKSDDN---GKAKKKPRVVVEVEQEDAD 293
Query: 380 ERQRL 366
R+ L
Sbjct: 294 TRRSL 298
>pir||H86366 protein F26F24.12 [imported] - Arabidopsis thaliana
gi|9295711|gb|AAF87017.1|AC005292_26 F26F24.12
[Arabidopsis thaliana]
Length = 301
Score = 38.5 bits (88), Expect = 0.062
Identities = 22/54 (40%), Positives = 33/54 (60%)
Frame = -1
Query: 527 DDEEAEALDQRRARRKMTLASKRHEKDILDSKSKKKARVLVEVEHEDADERQRL 366
DDE+ + +++ K A K+ + + K+KKK RV+VEVE EDAD R+ L
Sbjct: 246 DDEDDDDAEEQVVIHKKGRALKKSDDN---GKAKKKPRVVVEVEQEDADTRRSL 296
>ref|ZP_00072536.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 613
Score = 35.8 bits (81), Expect = 0.40
Identities = 24/61 (39%), Positives = 32/61 (52%)
Frame = -1
Query: 545 ENAGSTDDEEAEALDQRRARRKMTLASKRHEKDILDSKSKKKARVLVEVEHEDADERQRL 366
E A + DDE + +DQ R K L RH ILD + A +LV+ E D+DE Q L
Sbjct: 549 ETAAAIDDEVSNLVDQAYRRAKEVLVGNRH---ILD----RLAEMLVDKETVDSDELQEL 601
Query: 365 V 363
+
Sbjct: 602 L 602
>ref|NP_004485.1| hepatoma-derived growth factor (high-mobility group protein
1-like); Hepatoma-derived growth factor [Homo sapiens]
gi|1708157|sp|P51858|HDGF_HUMAN Hepatoma-derived growth
factor (HDGF) (High-mobility group protein 1-like 2)
(HMG-1L2) gi|627457|pir||A55055 hepatoma-derived growth
factor - human gi|598956|dbj|BAA03903.1|
hepatoma-derived GF [Homo sapiens]
gi|17512035|gb|AAH18991.1|AAH18991 hepatoma-derived
growth factor (high-mobility group protein 1-like) [Homo
sapiens]
Length = 240
Score = 35.8 bits (81), Expect = 0.40
Identities = 23/86 (26%), Positives = 44/86 (50%), Gaps = 1/86 (1%)
Frame = -1
Query: 575 ESQGGDGDENENA-GSTDDEEAEALDQRRARRKMTLASKRHEKDILDSKSKKKARVLVEV 399
E+ GDGD+ NA GS+D+E +D+ + A KR D+L+ K+ E
Sbjct: 117 EAAEGDGDKKGNAEGSSDEEGKLVIDEPAKEKNEKGALKRRAGDLLEDSPKRPK----EA 172
Query: 398 EHEDADERQRLVM*LQFTLVIDRRKS 321
E+ + +E++ + ++ L ++ K+
Sbjct: 173 ENPEGEEKEAATLEVERPLPMEVEKN 198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,356,865
Number of Sequences: 1393205
Number of extensions: 9901331
Number of successful extensions: 42673
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 34020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40386
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
