Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004259A_C01 KMC004259A_c01
(520 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568143.1| expressed protein; protein id: At5g04850.1, sup... 128 4e-29
gb|AAM66939.1| unknown [Arabidopsis thaliana] 126 1e-28
gb|AAF76370.1| unknown protein [Arabidopsis thaliana] gi|2902883... 124 5e-28
gb|AAG03104.1|AC073405_20 rice EST AU068661 corresponds to a reg... 104 5e-22
dbj|BAB16321.1| P0436E04.3 [Oryza sativa (japonica cultivar-grou... 101 5e-21
>ref|NP_568143.1| expressed protein; protein id: At5g04850.1, supported by cDNA:
8440., supported by cDNA: gi_13877956 [Arabidopsis
thaliana] gi|9758460|dbj|BAB08989.1|
gene_id:MUK11.17~unknown protein [Arabidopsis thaliana]
gi|13877957|gb|AAK44056.1|AF370241_1 unknown protein
[Arabidopsis thaliana] gi|23296841|gb|AAN13183.1|
unknown protein [Arabidopsis thaliana]
Length = 235
Score = 128 bits (321), Expect = 4e-29
Identities = 65/79 (82%), Positives = 68/79 (85%)
Frame = -3
Query: 518 DIDEDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRF 339
DIDED+L+GELDALE DMGNETEADGVPSYLQPDKEPDL+ ELNLPSAP G T P GR
Sbjct: 158 DIDEDDLLGELDALEADMGNETEADGVPSYLQPDKEPDLNDELNLPSAPMGHTGAPPGR- 216
Query: 338 NAQTEDELGLPAVPRASLR 282
AQ EDE GLPAVPRASLR
Sbjct: 217 -AQAEDEWGLPAVPRASLR 234
>gb|AAM66939.1| unknown [Arabidopsis thaliana]
Length = 235
Score = 126 bits (317), Expect = 1e-28
Identities = 64/79 (81%), Positives = 68/79 (86%)
Frame = -3
Query: 518 DIDEDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRF 339
DIDED+L+GELDAL+ DMGNETEADGVPSYLQPDKEPDL+ ELNLPSAP G T P GR
Sbjct: 158 DIDEDDLLGELDALKADMGNETEADGVPSYLQPDKEPDLNDELNLPSAPMGHTGAPPGR- 216
Query: 338 NAQTEDELGLPAVPRASLR 282
AQ EDE GLPAVPRASLR
Sbjct: 217 -AQAEDEWGLPAVPRASLR 234
>gb|AAF76370.1| unknown protein [Arabidopsis thaliana] gi|29028830|gb|AAO64794.1|
At3g10640 [Arabidopsis thaliana]
Length = 235
Score = 124 bits (312), Expect = 5e-28
Identities = 61/78 (78%), Positives = 66/78 (84%)
Frame = -3
Query: 515 IDEDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRFN 336
+DED+LMGELDALE DMGNETEADG+PSYLQPD E D D+ELNLP+APTG PHGR
Sbjct: 159 LDEDDLMGELDALEADMGNETEADGMPSYLQPDTETDYDSELNLPAAPTGHNGAPHGR-- 216
Query: 335 AQTEDELGLPAVPRASLR 282
AQ EDE GLPAVPRASLR
Sbjct: 217 AQAEDEFGLPAVPRASLR 234
>gb|AAG03104.1|AC073405_20 rice EST AU068661 corresponds to a region of the predicated gene;
unknown protein [Oryza sativa]
Length = 265
Score = 104 bits (260), Expect = 5e-22
Identities = 55/79 (69%), Positives = 63/79 (79%)
Frame = -3
Query: 518 DIDEDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRF 339
DIDE+ELMGELDALE DM + E++ VPSYLQPDKE DLD+ELNLP+APTG T P
Sbjct: 191 DIDEEELMGELDALEADM--DFESNSVPSYLQPDKESDLDSELNLPAAPTGHTPAPP--- 245
Query: 338 NAQTEDELGLPAVPRASLR 282
N Q EDELGLP VP+AS+R
Sbjct: 246 NRQQEDELGLPTVPQASIR 264
>dbj|BAB16321.1| P0436E04.3 [Oryza sativa (japonica cultivar-group)]
gi|20804449|dbj|BAB92146.1| hypothetical protein~similar
to Oryza sativa chromosome 5, AC073405_20 [Oryza sativa
(japonica cultivar-group)]
Length = 232
Score = 101 bits (252), Expect = 5e-21
Identities = 55/79 (69%), Positives = 60/79 (75%)
Frame = -3
Query: 518 DIDEDELMGELDALELDMGNETEADGVPSYLQPDKEPDLDAELNLPSAPTGQTADPHGRF 339
D+DE+ELMGELDALE DM E E+ VPSYLQPDKE D DAELNLP+APT A P R
Sbjct: 158 DVDEEELMGELDALEADM--EFESSAVPSYLQPDKESDFDAELNLPAAPTAPAAVPVSR- 214
Query: 338 NAQTEDELGLPAVPRASLR 282
Q DELGLPAVPRAS+R
Sbjct: 215 --QQVDELGLPAVPRASIR 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,182,672
Number of Sequences: 1393205
Number of extensions: 10225817
Number of successful extensions: 42059
Number of sequences better than 10.0: 177
Number of HSP's better than 10.0 without gapping: 32041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36675
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
