Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004256A_C01 KMC004256A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL77751.1| AT5g18830/F17K4_80 [Arabidopsis thaliana] 47 1e-04
ref|NP_197384.1| squamosa promoter binding protein-like 7; prote... 47 1e-04
gb|AAL36171.1| putative squamosa promoter binding protein 7 [Ara... 47 1e-04
ref|NP_077099.1| TrAP; AL2 PROTEIN [African cassava mosaic virus... 32 6.6
gb|EAA07205.1| ebiP148 [Anopheles gambiae str. PEST] 32 6.6
>gb|AAL77751.1| AT5g18830/F17K4_80 [Arabidopsis thaliana]
Length = 789
Score = 47.4 bits (111), Expect = 1e-04
Identities = 26/79 (32%), Positives = 46/79 (57%), Gaps = 3/79 (3%)
Frame = -3
Query: 493 CPTSNDQNEKIPLLKQEIIMNVEE---FPKRCDRRYLTRGLLSSRPAIFMAVSVAVCLGV 323
C + E PLL +E++MNV + +P++ + + SR +F+ + AVC V
Sbjct: 705 CSPDSGGKETDPLLNKEVVMNVNDIGDWPRKSCIKTHSALAFRSRQTMFLIATFAVCFAV 764
Query: 322 CVSVLHHHGRVSELALSIR 266
C +VL+H +V++LA++IR
Sbjct: 765 C-AVLYHPNKVTQLAVAIR 782
>ref|NP_197384.1| squamosa promoter binding protein-like 7; protein id: At5g18830.1,
supported by cDNA: gi_13605911 [Arabidopsis thaliana]
gi|25456658|pir||T52605 squamosa promoter binding
protein 7 [imported] - Arabidopsis thaliana
gi|5931635|emb|CAB56574.1| squamosa promoter binding
protein-like 7 [Arabidopsis thaliana]
gi|5931637|emb|CAB56575.1| squamosa promoter binding
protein-like 7 [Arabidopsis thaliana]
gi|13605912|gb|AAK32941.1|AF367355_1 AT5g18830/F17K4_80
[Arabidopsis thaliana]
Length = 801
Score = 47.4 bits (111), Expect = 1e-04
Identities = 26/79 (32%), Positives = 46/79 (57%), Gaps = 3/79 (3%)
Frame = -3
Query: 493 CPTSNDQNEKIPLLKQEIIMNVEE---FPKRCDRRYLTRGLLSSRPAIFMAVSVAVCLGV 323
C + E PLL +E++MNV + +P++ + + SR +F+ + AVC V
Sbjct: 717 CSPDSGGKETDPLLNKEVVMNVNDIGDWPRKSCIKTHSALAFRSRQTMFLIATFAVCFAV 776
Query: 322 CVSVLHHHGRVSELALSIR 266
C +VL+H +V++LA++IR
Sbjct: 777 C-AVLYHPNKVTQLAVAIR 794
>gb|AAL36171.1| putative squamosa promoter binding protein 7 [Arabidopsis thaliana]
Length = 775
Score = 47.4 bits (111), Expect = 1e-04
Identities = 26/79 (32%), Positives = 46/79 (57%), Gaps = 3/79 (3%)
Frame = -3
Query: 493 CPTSNDQNEKIPLLKQEIIMNVEE---FPKRCDRRYLTRGLLSSRPAIFMAVSVAVCLGV 323
C + E PLL +E++MNV + +P++ + + SR +F+ + AVC V
Sbjct: 691 CSPDSGGKETDPLLNKEVVMNVNDIGDWPRKSCIKTHSALAFRSRQTMFLIATFAVCFAV 750
Query: 322 CVSVLHHHGRVSELALSIR 266
C +VL+H +V++LA++IR
Sbjct: 751 C-AVLYHPNKVTQLAVAIR 768
>ref|NP_077099.1| TrAP; AL2 PROTEIN [African cassava mosaic virus]
gi|137423|sp|P14976|VAL2_CLVK AL2 PROTEIN (15.2 KD
PROTEIN)
Length = 135
Score = 31.6 bits (70), Expect = 6.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 339 ATETAIKIAGRELKSPLVRYRRSHLLGNSSTFIIISCFKSG 461
+T+ IK+ R++K +R RR L+ S ++ I+CF G
Sbjct: 11 STQVPIKVTHRQVKKRAIRRRRVDLVCGCSYYLHINCFNHG 51
>gb|EAA07205.1| ebiP148 [Anopheles gambiae str. PEST]
Length = 771
Score = 31.6 bits (70), Expect = 6.6
Identities = 14/51 (27%), Positives = 23/51 (44%)
Frame = +2
Query: 356 KNSWSRAQESPGKISPVASFRELFHIHYNLLLQKWYLFILVIASGTSQNCQ 508
KN+W + S V + +H +YN L W ++L+ S NC+
Sbjct: 630 KNAWGYTSKWTNYYSIVLTGAAFYHRYYNYLYTNWLSYLLLKTVQQSSNCE 680
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,537,754
Number of Sequences: 1393205
Number of extensions: 9561189
Number of successful extensions: 22005
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21990
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
