Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004253A_C01 KMC004253A_c01
(689 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566354.1| expressed protein; protein id: At3g09740.1, sup... 173 2e-42
ref|NP_566878.1| putative protein; protein id: At3g45280.1, supp... 155 4e-37
pir||T47468 hypothetical protein F18N11.40 - Arabidopsis thalian... 154 1e-36
ref|NP_567114.1| putative protein; protein id: At3g61450.1, supp... 150 2e-35
pir||T47937 hypothetical protein F2A19.50 - Arabidopsis thaliana... 112 4e-24
>ref|NP_566354.1| expressed protein; protein id: At3g09740.1, supported by cDNA:
gi_13811647, supported by cDNA: gi_19699302 [Arabidopsis
thaliana] gi|28380165|sp|Q9SF29|SY71_ARATH Syntaxin 71
(AtSYP71) gi|6682251|gb|AAF23303.1|AC016661_28 unknown
protein [Arabidopsis thaliana]
gi|13811648|gb|AAK40225.1|AF355757_1 syntaxin of plants
71 [Arabidopsis thaliana] gi|19699303|gb|AAL91262.1|
AT3g09740/F11F8_33 [Arabidopsis thaliana]
Length = 266
Score = 173 bits (439), Expect = 2e-42
Identities = 87/104 (83%), Positives = 97/104 (92%)
Frame = -3
Query: 684 ESSRFRNEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDQAAS 505
ESS+FR EYEMR+IKQ+QGLD+I+EGLD LK+MA DMNEELDRQVPLMDEIDTKVD+A S
Sbjct: 163 ESSQFRQEYEMRKIKQEQGLDMISEGLDALKNMASDMNEELDRQVPLMDEIDTKVDRATS 222
Query: 504 DLKNTHVRLKDTVIQLRSRRNFCIDIVLLIIILGIAAYLYHVLK 373
DLKNT+VRLKDTV QLRS RNFCIDIVLL I+LGIAAYLY+VLK
Sbjct: 223 DLKNTNVRLKDTVNQLRSSRNFCIDIVLLCIVLGIAAYLYNVLK 266
>ref|NP_566878.1| putative protein; protein id: At3g45280.1, supported by cDNA:
gi_13811649 [Arabidopsis thaliana]
gi|28380158|sp|Q94KK6|SY72_ARATH Syntaxin 72 (AtSYP72)
gi|13811650|gb|AAK40226.1|AF355758_1 syntaxin of plants
72 [Arabidopsis thaliana]
Length = 267
Score = 155 bits (393), Expect = 4e-37
Identities = 73/104 (70%), Positives = 92/104 (88%)
Frame = -3
Query: 687 EESSRFRNEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDQAA 508
EESS+FR EYEMRR KQD+GLD+I+EGLD LK++A DMNEELD+QVPLM+E++TKVD A
Sbjct: 163 EESSQFRQEYEMRRKKQDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGAT 222
Query: 507 SDLKNTHVRLKDTVIQLRSRRNFCIDIVLLIIILGIAAYLYHVL 376
SDLKNT+VRLK ++Q+RS RNFCIDI+LL +ILGI +Y+Y+ L
Sbjct: 223 SDLKNTNVRLKKQLVQMRSSRNFCIDIILLCVILGIVSYIYNAL 266
>pir||T47468 hypothetical protein F18N11.40 - Arabidopsis thaliana
gi|6967094|emb|CAB72477.1| putative protein [Arabidopsis
thaliana]
Length = 264
Score = 154 bits (388), Expect = 1e-36
Identities = 72/101 (71%), Positives = 90/101 (88%)
Frame = -3
Query: 687 EESSRFRNEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDQAA 508
EESS+FR EYEMRR KQD+GLD+I+EGLD LK++A DMNEELD+QVPLM+E++TKVD A
Sbjct: 163 EESSQFRQEYEMRRKKQDEGLDIISEGLDALKNLARDMNEELDKQVPLMEEMETKVDGAT 222
Query: 507 SDLKNTHVRLKDTVIQLRSRRNFCIDIVLLIIILGIAAYLY 385
SDLKNT+VRLK ++Q+RS RNFCIDI+LL +ILGI +Y+Y
Sbjct: 223 SDLKNTNVRLKKQLVQMRSSRNFCIDIILLCVILGIVSYIY 263
>ref|NP_567114.1| putative protein; protein id: At3g61450.1, supported by cDNA:
gi_13811651 [Arabidopsis thaliana]
gi|28380157|sp|Q94KK5|SY73_ARATH Syntaxin 73 (AtSYP73)
gi|13811652|gb|AAK40227.1|AF355759_1 syntaxin of plants
73 [Arabidopsis thaliana]
Length = 263
Score = 150 bits (379), Expect = 2e-35
Identities = 75/104 (72%), Positives = 93/104 (89%)
Frame = -3
Query: 684 ESSRFRNEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDQAAS 505
ES +F+ EYEM+RIKQ + LD IAEGLDTLK+MA D+NEELDRQ PLMDEIDTK+D+AA+
Sbjct: 161 ESDQFKQEYEMKRIKQAR-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAAT 219
Query: 504 DLKNTHVRLKDTVIQLRSRRNFCIDIVLLIIILGIAAYLYHVLK 373
DLK+T+VRLKDTV +LRS RNFCIDI+LL I+LGIAA++Y+ +K
Sbjct: 220 DLKSTNVRLKDTVTKLRSSRNFCIDIILLCILLGIAAFIYNSVK 263
>pir||T47937 hypothetical protein F2A19.50 - Arabidopsis thaliana
gi|6850836|emb|CAB71075.1| putative protein [Arabidopsis
thaliana]
Length = 274
Score = 112 bits (281), Expect = 4e-24
Identities = 62/111 (55%), Positives = 81/111 (72%), Gaps = 10/111 (9%)
Frame = -3
Query: 684 ESSRFRNEYEMRRIKQDQGLDVIAEGLDTLKDMAHDMNEELDRQVPLMDEIDTKVDQAAS 505
ES +F+ EYEM+RIKQ + LD IAEGLDTLK+MA D+NEELDRQ PLMDEIDTK+D+AA+
Sbjct: 161 ESDQFKQEYEMKRIKQAR-LDYIAEGLDTLKNMAQDINEELDRQEPLMDEIDTKIDKAAT 219
Query: 504 DLKNTHVRLKDTVIQ----------LRSRRNFCIDIVLLIIILGIAAYLYH 382
DLK+T+VRLKDTV + + + N C+ I L + G A +L++
Sbjct: 220 DLKSTNVRLKDTVTKPQLLHRHHPLMHTPGNRCLHIQLCEVKAGDACHLHY 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,767,686
Number of Sequences: 1393205
Number of extensions: 12876807
Number of successful extensions: 39575
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 36711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39140
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
