Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004252A_C01 KMC004252A_c01
(710 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK73280.1| drought-induced protein [Retama raetam] 168 6e-41
pir||JQ2266 cold acclimation protein cas15 - alfalfa gi|463275|g... 166 2e-40
gb|AAF33785.1|AF220457_1 cold acclimation responsive protein Bud... 166 2e-40
gb|AAA16927.1| CAS15 165 5e-40
gb|AAC25776.1| cold acclimation responsive protein CAR1 [Medicag... 163 3e-39
>gb|AAK73280.1| drought-induced protein [Retama raetam]
Length = 113
Score = 168 bits (426), Expect = 6e-41
Identities = 92/149 (61%), Positives = 101/149 (67%), Gaps = 6/149 (4%)
Frame = +2
Query: 32 MAGIVNKITETL--GGHKKE----GETHGEFKGEQHHGAGGDYKGEHYGGEHKGEHYGGE 193
MAGI+NKI ETL GGHKKE GE HGE+KGE H GE
Sbjct: 1 MAGIINKIGETLHVGGHKKEEEHKGEVHGEYKGESH----------------------GE 38
Query: 194 HKGESHGIGGFGHGGEQKGESHGIGGFGHGGEHKPEHHGQENKEGFLDKVKDKIHGDEGE 373
+KGESHG E KGE HG +GGEHKPEHHG+E+KEGF+DK+KDKIHGD GE
Sbjct: 39 YKGESHG--------EHKGELHG-----YGGEHKPEHHGEEHKEGFVDKIKDKIHGD-GE 84
Query: 374 GVEKKKKKDRKKHEHGHEHGHDSSSSDSD 460
G EKKKKKD+KKHEHGHEHGHDSSSSDSD
Sbjct: 85 GGEKKKKKDKKKHEHGHEHGHDSSSSDSD 113
>pir||JQ2266 cold acclimation protein cas15 - alfalfa gi|463275|gb|AAA16926.1|
CAS15 gi|6969494|gb|AAF33784.1|AF220456_1 cold
acclimation responsive protein BudCAR4 [Medicago sativa]
gi|6969498|gb|AAF33786.1|AF220458_1 cold acclimation
responsive protein BudCAR6 [Medicago sativa]
Length = 136
Score = 166 bits (421), Expect = 2e-40
Identities = 90/147 (61%), Positives = 107/147 (72%), Gaps = 4/147 (2%)
Frame = +2
Query: 32 MAGIVNKITETL--GGHKKEGETHGEFKGEQHHGAGGDYKGEHYGGEHK--GEHYGGEHK 199
MAGI+NKI + L GG KKEGE KGEQH GG++ GE+ G +H G H G+HK
Sbjct: 1 MAGIMNKIGDALHGGGDKKEGE----HKGEQHGHVGGEHHGEYKGEQHGFVGGH-AGDHK 55
Query: 200 GESHGIGGFGHGGEQKGESHGIGGFGHGGEHKPEHHGQENKEGFLDKVKDKIHGDEGEGV 379
GE HG G GHGG+ KGE HG FGHG +HK +HG+E+KEGF DK+KDKIHG+ +G
Sbjct: 56 GEQHGFVG-GHGGDYKGEQHG---FGHG-DHKEGYHGEEHKEGFADKIKDKIHGEGADG- 109
Query: 380 EKKKKKDRKKHEHGHEHGHDSSSSDSD 460
EKKKKK++KKH GHEHGHDSSSSDSD
Sbjct: 110 EKKKKKEKKKHGEGHEHGHDSSSSDSD 136
>gb|AAF33785.1|AF220457_1 cold acclimation responsive protein BudCAR5 [Medicago sativa]
Length = 139
Score = 166 bits (421), Expect = 2e-40
Identities = 92/149 (61%), Positives = 109/149 (72%), Gaps = 6/149 (4%)
Frame = +2
Query: 32 MAGIVNKITETL--GGHKKEGETHGEFKGEQHHGAGGDYKGEHYGGEHK--GEHYGGEHK 199
MAGI+NKI + L GG KKEGE KGEQH GG+ GE+ G +H G H GEHK
Sbjct: 1 MAGIMNKIGDALHIGGDKKEGE----HKGEQHGHVGGEQHGEYKGEQHGFVGGH-AGEHK 55
Query: 200 GESHG-IGGFG-HGGEQKGESHGIGGFGHGGEHKPEHHGQENKEGFLDKVKDKIHGDEGE 373
GE HG +GG G HGG+ KGE HG FGHG +HK +HG+E+KEGF+DK+KDKIHG+ +
Sbjct: 56 GEHHGLVGGVGGHGGDYKGEQHG---FGHG-DHKEGYHGEEHKEGFVDKIKDKIHGEGAD 111
Query: 374 GVEKKKKKDRKKHEHGHEHGHDSSSSDSD 460
G EKKKKK++KKH GHEHGHDSSSSDSD
Sbjct: 112 G-EKKKKKEKKKHGEGHEHGHDSSSSDSD 139
>gb|AAA16927.1| CAS15
Length = 136
Score = 165 bits (418), Expect = 5e-40
Identities = 89/147 (60%), Positives = 107/147 (72%), Gaps = 4/147 (2%)
Frame = +2
Query: 32 MAGIVNKITETL--GGHKKEGETHGEFKGEQHHGAGGDYKGEHYGGEHK--GEHYGGEHK 199
MAGI+NKI + L GG KKEGE KGEQH GG++ GE+ G +H G H G+HK
Sbjct: 1 MAGIMNKIGDALHGGGDKKEGE----HKGEQHGHVGGEHHGEYKGEQHGFVGGH-AGDHK 55
Query: 200 GESHGIGGFGHGGEQKGESHGIGGFGHGGEHKPEHHGQENKEGFLDKVKDKIHGDEGEGV 379
GE HG G GHGG+ KGE HG FGHG +HK +HG+++KEGF DK+KDKIHG+ +G
Sbjct: 56 GEQHGFVG-GHGGDYKGEQHG---FGHG-DHKEGYHGEDHKEGFADKIKDKIHGEGADG- 109
Query: 380 EKKKKKDRKKHEHGHEHGHDSSSSDSD 460
EKKKKK++KKH GHEHGHDSSSSDSD
Sbjct: 110 EKKKKKEKKKHGEGHEHGHDSSSSDSD 136
>gb|AAC25776.1| cold acclimation responsive protein CAR1 [Medicago sativa]
Length = 136
Score = 163 bits (412), Expect = 3e-39
Identities = 89/147 (60%), Positives = 106/147 (71%), Gaps = 4/147 (2%)
Frame = +2
Query: 32 MAGIVNKITETL--GGHKKEGETHGEFKGEQHHGAGGDYKGEHYGGEHK--GEHYGGEHK 199
MAGI+NKI + L GG KKEGE KGEQH GG++ GE+ +H G H G+HK
Sbjct: 1 MAGIMNKIGDALHGGGDKKEGE----HKGEQHGHVGGEHHGEYKVEQHGFVGGH-AGDHK 55
Query: 200 GESHGIGGFGHGGEQKGESHGIGGFGHGGEHKPEHHGQENKEGFLDKVKDKIHGDEGEGV 379
GE HG G GHGG+ KGE HG FGHG +HK +HG+E+KEGF DK+KDKIHG+ +G
Sbjct: 56 GEQHGFVG-GHGGDYKGEQHG---FGHG-DHKEGYHGEEHKEGFADKIKDKIHGEGADG- 109
Query: 380 EKKKKKDRKKHEHGHEHGHDSSSSDSD 460
EKKKKK++KKH GHEHGHDSSSSDSD
Sbjct: 110 EKKKKKEKKKHGEGHEHGHDSSSSDSD 136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 706,311,188
Number of Sequences: 1393205
Number of extensions: 20198534
Number of successful extensions: 148307
Number of sequences better than 10.0: 3224
Number of HSP's better than 10.0 without gapping: 74117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113812
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
