Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004250A_C01 KMC004250A_c01
(425 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q98893|VIT2_FUNHE Vitellogenin II precursor (VTG II) [Contain... 37 0.074
ref|NP_650326.1| CG12537-PA [Drosophila melanogaster] gi|7299830... 37 0.074
ref|NP_701634.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.097
gb|EAA30604.1| hypothetical protein [Neurospora crassa] 36 0.13
ref|NP_700687.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.13
>sp|Q98893|VIT2_FUNHE Vitellogenin II precursor (VTG II) [Contains: Lipovitellin 1 (LV1);
Phosvitin (PV); Lipovitellin 2 (LV2); YP 69]
gi|11277190|pir||T43144 vitellogenin II precursor -
mummichog gi|1621359|gb|AAB17152.1| vitellogenin II
precursor [Fundulus heteroclitus]
Length = 1687
Score = 36.6 bits (83), Expect = 0.074
Identities = 19/34 (55%), Positives = 26/34 (75%)
Frame = -3
Query: 408 SQASSSSSSSSSSSSSNSHFNFHFTKRKWKVEEQ 307
S+ SSSSSSSSSSSSS+S + +K KW++ E+
Sbjct: 1145 SKRSSSSSSSSSSSSSSSSSSSSSSKTKWQLHER 1178
Score = 31.2 bits (69), Expect = 3.1
Identities = 18/30 (60%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
Frame = -3
Query: 411 NSQASSSSSSSSSSSSSNSHFNFH---FTK 331
+S +SSSSSSSSSSSSS + + H FTK
Sbjct: 1153 SSSSSSSSSSSSSSSSSKTKWQLHERNFTK 1182
>ref|NP_650326.1| CG12537-PA [Drosophila melanogaster] gi|7299830|gb|AAF55008.1|
CG12537-PA [Drosophila melanogaster]
Length = 431
Score = 36.6 bits (83), Expect = 0.074
Identities = 18/26 (69%), Positives = 21/26 (80%)
Frame = -3
Query: 423 QQHYNSQASSSSSSSSSSSSSNSHFN 346
QQH++ SSSSSSSSSSSSS+ H N
Sbjct: 363 QQHHHHHHSSSSSSSSSSSSSHHHHN 388
Score = 29.6 bits (65), Expect = 9.1
Identities = 15/24 (62%), Positives = 18/24 (74%)
Frame = -3
Query: 423 QQHYNSQASSSSSSSSSSSSSNSH 352
QQ ++ SSSSSSSSSSSS+ H
Sbjct: 362 QQQHHHHHHSSSSSSSSSSSSSHH 385
>ref|NP_701634.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496804|gb|AAN36358.1|AE014848_34 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 447
Score = 36.2 bits (82), Expect = 0.097
Identities = 18/25 (72%), Positives = 22/25 (88%)
Frame = -3
Query: 408 SQASSSSSSSSSSSSSNSHFNFHFT 334
S +SSSSSSSSSSSSS+S FN H++
Sbjct: 366 SSSSSSSSSSSSSSSSSSFFNDHYS 390
Score = 30.4 bits (67), Expect = 5.3
Identities = 14/23 (60%), Positives = 19/23 (81%)
Frame = -3
Query: 411 NSQASSSSSSSSSSSSSNSHFNF 343
+S +SSSSSSSSSSS N H+++
Sbjct: 369 SSSSSSSSSSSSSSSFFNDHYSY 391
>gb|EAA30604.1| hypothetical protein [Neurospora crassa]
Length = 692
Score = 35.8 bits (81), Expect = 0.13
Identities = 18/24 (75%), Positives = 21/24 (87%)
Frame = -3
Query: 411 NSQASSSSSSSSSSSSSNSHFNFH 340
+S +SSSSSSSSSSSSSN+ FN H
Sbjct: 520 SSSSSSSSSSSSSSSSSNTGFNSH 543
Score = 31.2 bits (69), Expect = 3.1
Identities = 16/24 (66%), Positives = 21/24 (86%)
Frame = -3
Query: 411 NSQASSSSSSSSSSSSSNSHFNFH 340
+S +SSSSSSSSSSSSS+S+ F+
Sbjct: 518 SSSSSSSSSSSSSSSSSSSNTGFN 541
Score = 30.8 bits (68), Expect = 4.1
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = -3
Query: 411 NSQASSSSSSSSSSSSSNSHFNFHF 337
+S +SSSSSSSSSSSSS+S N F
Sbjct: 516 SSSSSSSSSSSSSSSSSSSSSNTGF 540
Score = 29.6 bits (65), Expect = 9.1
Identities = 14/22 (63%), Positives = 18/22 (81%)
Frame = -3
Query: 411 NSQASSSSSSSSSSSSSNSHFN 346
+S +SSSSSSSSS++ NSH N
Sbjct: 524 SSSSSSSSSSSSSNTGFNSHVN 545
>ref|NP_700687.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495079|gb|AAN35411.1|AE014832_33 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1434
Score = 35.8 bits (81), Expect = 0.13
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -3
Query: 399 SSSSSSSSSSSSSNSHFNFHFTKRKWK 319
S+SSSSS+SSSS+N+HF + K WK
Sbjct: 916 SNSSSSSNSSSSNNNHFEKRWDKNTWK 942
Score = 30.4 bits (67), Expect = 5.3
Identities = 15/24 (62%), Positives = 20/24 (82%)
Frame = -3
Query: 399 SSSSSSSSSSSSSNSHFNFHFTKR 328
S+S+S+SSSSS+S+S N HF KR
Sbjct: 912 SNSNSNSSSSSNSSSSNNNHFEKR 935
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,929,123
Number of Sequences: 1393205
Number of extensions: 6199921
Number of successful extensions: 140170
Number of sequences better than 10.0: 445
Number of HSP's better than 10.0 without gapping: 41050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101073
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
