Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004249A_C01 KMC004249A_c01
(713 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA51649.1| arabinogalactan-protein 68 1e-10
ref|NP_196605.1| arabinogalactan-protein (AGP4); protein id: At5... 59 5e-08
ref|NP_046248.1| unknown [Orgyia pseudotsugata multicapsid nucle... 58 1e-07
ref|ZP_00116439.1| hypothetical protein [Synechococcus sp. WH 8102] 58 1e-07
pir||T08148 proline-rich myrosinase-binding protein homolog - ra... 57 2e-07
>gb|AAA51649.1| arabinogalactan-protein
Length = 145
Score = 67.8 bits (164), Expect = 1e-10
Identities = 39/83 (46%), Positives = 49/83 (58%), Gaps = 4/83 (4%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPP----PPSAA 545
PT SP APTPSAS P + S PAS P A P +A P +S ++PP PPS
Sbjct: 66 PTPSPVTAPTPSASPPSSTPASTPASTP---AAKSPSSSAAPSGSSPNSPPADAIPPSGT 122
Query: 544 FSLNQPIIAGTALVATFFAMVLA 476
++++ IAGTAL FFA+VLA
Sbjct: 123 SAISRVAIAGTALAGVFFAIVLA 145
>ref|NP_196605.1| arabinogalactan-protein (AGP4); protein id: At5g10430.1, supported
by cDNA: gi_13926257, supported by cDNA: gi_14596012,
supported by cDNA: gi_3883125, supported by cDNA:
gi_5059000 [Arabidopsis thaliana]
gi|11357181|pir||T49996 AtAGP4 - Arabidopsis thaliana
gi|3883126|gb|AAC77826.1| arabinogalactan-protein
[Arabidopsis thaliana]
gi|5059001|gb|AAD38870.1|AF060874_1 AtAGP4 [Arabidopsis
thaliana] gi|7671460|emb|CAB89400.1| AtAGP4 [Arabidopsis
thaliana] gi|13926258|gb|AAK49601.1|AF372885_1
AT5g10430/F12B17_220 [Arabidopsis thaliana]
gi|14596013|gb|AAK68734.1| AtAGP4 [Arabidopsis thaliana]
gi|27363326|gb|AAO11582.1| At5g10430/F12B17_220
[Arabidopsis thaliana]
Length = 135
Score = 59.3 bits (142), Expect = 5e-08
Identities = 38/94 (40%), Positives = 49/94 (51%), Gaps = 15/94 (15%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPP-----APTPSGPASGPGPA----------AGPGPGPAAGPGPN 578
P A+P A TP+ ++PP AP + P+ P PA GP P++ PGP+
Sbjct: 45 PVATPPPAATPAPATPPPAATPAPATTPPSVAPSPADVPTASPPAPEGPTVSPSSAPGPS 104
Query: 577 SADTPPPPSAAFSLNQPIIAGTALVATFFAMVLA 476
D P PSAAFS N+ AGTA A +A VLA
Sbjct: 105 --DASPAPSAAFS-NKAFFAGTAFAAIMYAAVLA 135
Score = 38.1 bits (87), Expect = 0.12
Identities = 23/48 (47%), Positives = 28/48 (57%)
Frame = -2
Query: 691 APTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSA 548
APTP+A+ PPA P P + P P A P P AA P P + PPP+A
Sbjct: 25 APTPTATPPPATPP--PVATPPPVATPPP--AATPAPAT----PPPAA 64
>ref|NP_046248.1| unknown [Orgyia pseudotsugata multicapsid nucleopolyhedrovirus]
gi|2493240|sp|O10341|Y091_NPVOP HYPOTHETICAL 29.3 KD
PROTEIN (ORF92) gi|7515481|pir||T10361 hypothetical
protein 92 - Orgyia pseudotsugata nuclear polyhedrosis
virus gi|1911338|gb|AAC59091.1| unknown [Orgyia
pseudotsugata multicapsid nucleopolyhedrovirus]
Length = 279
Score = 57.8 bits (138), Expect = 1e-07
Identities = 27/63 (42%), Positives = 34/63 (53%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAAFSLN 533
PT SPT +PTPS + P+PTPS P P P P P P+ P P +P PP + L
Sbjct: 135 PTPSPTPSPTPSPTPTPSPTPS-PTPTPSPTPSPTPTPSPTPSPTPPPSPTPPPSPSPLG 193
Query: 532 QPI 524
P+
Sbjct: 194 DPM 196
Score = 54.7 bits (130), Expect = 1e-06
Identities = 24/53 (45%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT SPT P+P+ S P+PTP+ P P P P P P P P + TPPP
Sbjct: 129 PTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPPP 181
Score = 53.9 bits (128), Expect = 2e-06
Identities = 25/52 (48%), Positives = 29/52 (55%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT SPT +PTPS + P+PTPS P P P P P P P P + TP P
Sbjct: 81 PTPSPTLSPTPSPTPTPSPTPS-PTPSPTPTPSPTPSPTPTPSPTPSPTPTP 131
Score = 53.5 bits (127), Expect = 3e-06
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT SPT +PTP+ S P+PTPS P P P+ P P P P P + TP P
Sbjct: 85 PTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTPTP 137
Score = 53.5 bits (127), Expect = 3e-06
Identities = 25/53 (47%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT SPT +PTPS + P+PTPS P P P+ P P P P P + TP P
Sbjct: 95 PTPSPTPSPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTPTPSPTPSPTPSP 147
Score = 52.0 bits (123), Expect = 8e-06
Identities = 26/67 (38%), Positives = 34/67 (49%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAAFSLN 533
PT SPT +PTP+ S P+PTP+ P+ P P P P P+ P P+ P P +
Sbjct: 139 PTPSPTPSPTPTPSPTPSPTPT-PSPTPSPTPTPSPTPSPTPPPSPTPPPSPSPLGDPMY 197
Query: 532 QPIIAGT 512
P GT
Sbjct: 198 FPSSVGT 204
Score = 51.6 bits (122), Expect = 1e-05
Identities = 24/55 (43%), Positives = 30/55 (53%), Gaps = 3/55 (5%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSG---PASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT SPT +PTP+ S P+PTP+ P P P+ P P P P P+ TP P
Sbjct: 109 PTPSPTPSPTPTPSPTPSPTPTPSPTPTPSPTPSPTPSPTPTPSPTPSPTPTPSP 163
Score = 50.8 bits (120), Expect = 2e-05
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS---GPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT +PT +PTP+ + P PTPS P P P P P P P P + TP P
Sbjct: 63 PTPTPTPSPTPTPALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSPTPTPSPTPSP 117
Score = 50.4 bits (119), Expect = 2e-05
Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT +PT PTP+ + P PTP+ P P P P P P P P + TP P
Sbjct: 55 PTPTPTPTPTPTPTPSPTPTPALSPTPTPSPTLSPTPSPTPTPSPTPSPTPSP 107
Score = 47.8 bits (112), Expect = 2e-04
Identities = 23/53 (43%), Positives = 26/53 (48%), Gaps = 1/53 (1%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
PT SPT PTPS + P PTP+ P P P P P P P + TP P
Sbjct: 41 PTPSPTPTPTPSPTPTPTPTPTPTPTPTPSPTPTPALSPTPTPSPTLSPTPSP 93
Score = 46.6 bits (109), Expect = 3e-04
Identities = 24/56 (42%), Positives = 30/56 (52%), Gaps = 2/56 (3%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADT-PPPPS 551
PT +PT +PTP+ + P PTP+ P P P P P PA P P + T P PS
Sbjct: 37 PTPTPTPSPTPTPTPSPTPTPTPTPTPTPTPTPSPTPTPALSPTPTPSPTLSPTPS 92
Score = 45.1 bits (105), Expect = 0.001
Identities = 22/52 (42%), Positives = 27/52 (51%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
P SPT PTPS + P P+P+ P P P P P P+ P P + TP P
Sbjct: 33 PLPSPTPTPTPSPTPTPTPSPT-PTPTPTPTPTPTPTPSPTPTPALSPTPTP 83
Score = 42.0 bits (97), Expect = 0.008
Identities = 23/59 (38%), Positives = 28/59 (46%), Gaps = 2/59 (3%)
Frame = -2
Query: 709 TASPTGAPTPSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADTP-PPPSAAFS 539
T P +PTP+ + P PTP+ P P P P P P P P A +P P PS S
Sbjct: 30 TKPPLPSPTPTPTPSPTPTPTPSPTPTPTPTPTPTPTPTPSPTPTPALSPTPTPSPTLS 88
>ref|ZP_00116439.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 1954
Score = 57.8 bits (138), Expect = 1e-07
Identities = 28/62 (45%), Positives = 36/62 (57%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAAFSLN 533
PT SP+ PTPS S+ P PTP+ P P P+A P P P+A P P+ + TP P +A
Sbjct: 1554 PTPSPSATPTPSPSATPTPTPT-PTPTPTPSATPTPSPSATPTPSPSATPTPSPSATPTP 1612
Query: 532 QP 527
P
Sbjct: 1613 SP 1614
Score = 56.2 bits (134), Expect = 4e-07
Identities = 27/62 (43%), Positives = 36/62 (57%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAAFSLN 533
PT SP+ PTPS S+ P P+PS + P P+A P P P+A P P+ + TP P +A
Sbjct: 1586 PTPSPSATPTPSPSATPTPSPSATPT-PSPSATPTPSPSATPTPSPSATPTPSPSATPTP 1644
Query: 532 QP 527
P
Sbjct: 1645 SP 1646
Score = 55.8 bits (133), Expect = 6e-07
Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTP-PPPSA 548
PT SP+ PTPS S+ P P+PS + P P+A P P P+A P P+ + TP P PSA
Sbjct: 1594 PTPSPSATPTPSPSATPTPSPSATPT-PSPSATPTPSPSATPTPSPSATPTPSPSA 1648
Score = 55.5 bits (132), Expect = 7e-07
Identities = 26/56 (46%), Positives = 34/56 (60%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAA 545
PT SP+ PTPS S+ P P+PS + P P+A P P P+A P P+ + TP P A
Sbjct: 1602 PTPSPSATPTPSPSATPTPSPSATPT-PSPSATPTPSPSATPTPSPSATPDPTPTA 1656
Score = 54.7 bits (130), Expect = 1e-06
Identities = 26/62 (41%), Positives = 36/62 (57%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAAFSLN 533
PT +PT PTP+ S+ P P+PS + P P+A P P P+A P P+ + TP P +A
Sbjct: 1570 PTPTPTPTPTPTPSATPTPSPSATPT-PSPSATPTPSPSATPTPSPSATPTPSPSATPTP 1628
Query: 532 QP 527
P
Sbjct: 1629 SP 1630
Score = 53.9 bits (128), Expect = 2e-06
Identities = 29/57 (50%), Positives = 35/57 (60%), Gaps = 2/57 (3%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSG-PASGPGPAAGPGPGPAAGPGPNSADTP-PPPSA 548
PT S T PTPSA+ P PTP+ P P P+A P P P+A P P+ + TP P PSA
Sbjct: 1512 PTPSVTPTPTPSATPTPTPTPTPTPTPTPTPSATPTPSPSATPTPSPSATPTPSPSA 1568
Score = 48.1 bits (113), Expect = 1e-04
Identities = 24/62 (38%), Positives = 33/62 (52%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAAFSLN 533
PT +P+ PTP+ S+ P PTP+ P P P P P+A P P+ + TP P +A
Sbjct: 1510 PTPTPSVTPTPTPSATPTPTPT-----PTPTPTPTPTPSATPTPSPSATPTPSPSATPTP 1564
Query: 532 QP 527
P
Sbjct: 1565 SP 1566
Score = 47.8 bits (112), Expect = 2e-04
Identities = 26/69 (37%), Positives = 36/69 (51%), Gaps = 7/69 (10%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSG-----PASGPGPAAG--PGPGPAAGPGPNSADTPPPP 554
PT +P+ PTPS S+ P P+PS P++ P P P P P+A P P+ + TP P
Sbjct: 1538 PTPTPSATPTPSPSATPTPSPSATPTPSPSATPTPTPTPTPTPTPSATPTPSPSATPTPS 1597
Query: 553 SAAFSLNQP 527
+A P
Sbjct: 1598 PSATPTPSP 1606
Score = 45.8 bits (107), Expect = 6e-04
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSG-----PASGPGPAAG--PGPGPAAGPGPNSADTPPPP 554
PT +PT PTP+ S+ P P+PS P++ P P+ P P P P P + TP P
Sbjct: 1530 PTPTPTPTPTPTPSATPTPSPSATPTPSPSATPTPSPSATPTPTPTPTPTPTPSATPTPS 1589
Query: 553 SAAFSLNQP 527
+A P
Sbjct: 1590 PSATPTPSP 1598
Score = 41.6 bits (96), Expect = 0.011
Identities = 21/51 (41%), Positives = 25/51 (48%)
Frame = -2
Query: 709 TASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
T S + PTP+ S P PTPS P P P P P P P++ TP P
Sbjct: 1503 TTSDSTTPTPTPSVTPTPTPSAT---PTPTPTPTPTPTPTPTPSATPTPSP 1550
>pir||T08148 proline-rich myrosinase-binding protein homolog - rape (fragment)
gi|1655830|gb|AAC08051.1| myrosinase-binding protein
related protein [Brassica napus]
Length = 552
Score = 57.4 bits (137), Expect = 2e-07
Identities = 27/59 (45%), Positives = 31/59 (51%), Gaps = 7/59 (11%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPS-------GPASGPGPAAGPGPGPAAGPGPNSADTPPP 557
P+ +P AP P+ S PAP P+ GP P P AGP P PA GPGP A P P
Sbjct: 302 PSPAPGPAPAPAPGSHPAPAPAPAPAPGQGPRPAPAPGAGPRPSPAPGPGPRPAPAPAP 360
Score = 52.4 bits (124), Expect = 6e-06
Identities = 25/57 (43%), Positives = 26/57 (44%), Gaps = 5/57 (8%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSG-----PASGPGPAAGPGPGPAAGPGPNSADTPPP 557
P +P AP P PAP P PA GPGP P P PA G GP A P P
Sbjct: 318 PAPAPAPAPAPGQGPRPAPAPGAGPRPSPAPGPGPRPAPAPAPAPGQGPRPAPGPAP 374
Score = 51.6 bits (122), Expect = 1e-05
Identities = 28/70 (40%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSG---PASGPGPAAGPGPGPAAGPGPNSADTPPPPSAAF 542
P P AP P A P+P P PA P PA G GP PA GP P P P +A
Sbjct: 328 PGQGPRPAPAPGAGPRPSPAPGPGPRPAPAPAPAPGQGPRPAPGPAPGQGPHPAPAAAPG 387
Query: 541 SLNQPIIAGT 512
+ P A T
Sbjct: 388 TSATPAPAPT 397
Score = 42.4 bits (98), Expect = 0.006
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 682 PSASSPPAPTPS-GPASGPGPAAGPGPGPAAGPGPNSADTPPPPSAA 545
P + PAP+P+ GPA P P + P P PA P P P P A
Sbjct: 294 PLRTPAPAPSPAPGPAPAPAPGSHPAPAPAPAPAPGQGPRPAPAPGA 340
Score = 41.2 bits (95), Expect = 0.014
Identities = 21/53 (39%), Positives = 24/53 (44%)
Frame = -2
Query: 712 PTASPTGAPTPSASSPPAPTPSGPASGPGPAAGPGPGPAAGPGPNSADTPPPP 554
P +P AP P PAP P+ P GP PA PG +A P P T P
Sbjct: 352 PRPAPAPAPAPGQGPRPAPGPA-PGQGPHPAPAAAPGTSATPAPAPTTTKIGP 403
Score = 39.3 bits (90), Expect = 0.055
Identities = 31/92 (33%), Positives = 35/92 (37%), Gaps = 2/92 (2%)
Frame = +3
Query: 444 PSKGLHVEES*AKTMAKKVATRAVPAMMGWLSENAAEGGGGVSALFGPGPAAGPGPGPAA 623
P+ G H + A A R PA + A G G A P PA G GP PA
Sbjct: 312 PAPGSHPAPAPAPAPAPGQGPRPAPAPGAGPRPSPAPGPGPRPAP-APAPAPGQGPRPAP 370
Query: 624 GPGPDAGPD--GVGAGGEEAEGVGAPVGEAVG 713
GP P GP A G A AP +G
Sbjct: 371 GPAPGQGPHPAPAAAPGTSATPAPAPTTTKIG 402
Score = 37.7 bits (86), Expect = 0.16
Identities = 16/33 (48%), Positives = 16/33 (48%)
Frame = -2
Query: 646 GPASGPGPAAGPGPGPAAGPGPNSADTPPPPSA 548
GP P PA P PGPA P P S P P A
Sbjct: 293 GPLRTPAPAPSPAPGPAPAPAPGSHPAPAPAPA 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 737,101,774
Number of Sequences: 1393205
Number of extensions: 22006952
Number of successful extensions: 538096
Number of sequences better than 10.0: 8436
Number of HSP's better than 10.0 without gapping: 124310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349052
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
