Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004246A_C02 KMC004246A_c02
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174323.1| auxin response transcription factor(ARF6); prot... 165 5e-40
dbj|BAB85915.1| auxin response factor 6b [Oryza sativa] 132 5e-30
dbj|BAB85918.1| auxin response factor 8 [Oryza sativa] 100 2e-20
ref|NP_198518.1| auxin response transcription factor(ARF8); prot... 99 3e-20
dbj|BAB85916.1| auxin response factor 7a [Oryza sativa] 94 2e-18
>ref|NP_174323.1| auxin response transcription factor(ARF6); protein id: At1g30330.1,
supported by cDNA: gi_4102599 [Arabidopsis thaliana]
gi|25403108|pir||F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana
gi|4102600|gb|AAD01513.1| ARF6 [Arabidopsis thaliana]
gi|12322119|gb|AAG51093.1|AC025295_1 auxin response
factor 6 (ARF6) [Arabidopsis thaliana]
Length = 933
Score = 165 bits (417), Expect = 5e-40
Identities = 80/105 (76%), Positives = 89/105 (84%), Gaps = 5/105 (4%)
Frame = -2
Query: 615 LARMFGLEGELEDPVRSGWQLVFVDRESDVLLLGDGPWPEFVNSVWCIKILSPQEMQQMG 436
LARMFGLEG+LEDPVRSGWQLVFVDRE+DVLLLGD PWPEFV+SVWCIKILSPQE+QQMG
Sbjct: 824 LARMFGLEGQLEDPVRSGWQLVFVDRENDVLLLGDDPWPEFVSSVWCIKILSPQEVQQMG 883
Query: 435 NTGLELLNSVPNPR-----LSNGVCDDYMSRQDPRNLGSGITTVG 316
GLELLNS P+ SNG CDD+ +R DPRNLG+GI +VG
Sbjct: 884 KRGLELLNSAPSSNNVDKLPSNGNCDDFGNRSDPRNLGNGIASVG 928
>dbj|BAB85915.1| auxin response factor 6b [Oryza sativa]
Length = 880
Score = 132 bits (331), Expect = 5e-30
Identities = 62/104 (59%), Positives = 76/104 (72%)
Frame = -2
Query: 615 LARMFGLEGELEDPVRSGWQLVFVDRESDVLLLGDGPWPEFVNSVWCIKILSPQEMQQMG 436
L R+FGLEG+LEDPVRSGWQLVFVDRE+D+LL+GD PW EF NSVWCIKILSPQE+QQ+
Sbjct: 777 LERLFGLEGQLEDPVRSGWQLVFVDRENDILLVGDDPWQEFANSVWCIKILSPQEVQQLV 836
Query: 435 NTGLELLNSVPNPRLSNGVCDDYMSRQDPRNLGSGITTVGSLDY 304
G LL+S + CDDY + + +N+ I +V LDY
Sbjct: 837 RGGDGLLSSPGARMQQSNACDDYSASHNMQNIAGNIASVAPLDY 880
>dbj|BAB85918.1| auxin response factor 8 [Oryza sativa]
Length = 795
Score = 100 bits (248), Expect = 2e-20
Identities = 44/63 (69%), Positives = 54/63 (84%)
Frame = -2
Query: 615 LARMFGLEGELEDPVRSGWQLVFVDRESDVLLLGDGPWPEFVNSVWCIKILSPQEMQQMG 436
L +MFG++G+L+DP RSGWQLVFVDRE+DVLLLGD PW FVNSVW IKILSP+++ +MG
Sbjct: 726 LGQMFGIKGQLDDPDRSGWQLVFVDRENDVLLLGDDPWESFVNSVWYIKILSPEDVHKMG 785
Query: 435 NTG 427
G
Sbjct: 786 KQG 788
>ref|NP_198518.1| auxin response transcription factor(ARF8); protein id: At5g37020.1,
supported by cDNA: gi_4104930 [Arabidopsis thaliana]
gi|4104931|gb|AAD02219.1| auxin response factor 8
[Arabidopsis thaliana]
Length = 811
Score = 99.4 bits (246), Expect = 3e-20
Identities = 43/63 (68%), Positives = 54/63 (85%)
Frame = -2
Query: 615 LARMFGLEGELEDPVRSGWQLVFVDRESDVLLLGDGPWPEFVNSVWCIKILSPQEMQQMG 436
L +MF +EG LEDP+RSGWQLVFVD+E+D+LLLGD PW FVN+VW IKILSP+++ QMG
Sbjct: 735 LGKMFAIEGLLEDPLRSGWQLVFVDKENDILLLGDDPWESFVNNVWYIKILSPEDVHQMG 794
Query: 435 NTG 427
+ G
Sbjct: 795 DHG 797
>dbj|BAB85916.1| auxin response factor 7a [Oryza sativa]
Length = 1123
Score = 93.6 bits (231), Expect = 2e-18
Identities = 43/71 (60%), Positives = 54/71 (75%)
Frame = -2
Query: 615 LARMFGLEGELEDPVRSGWQLVFVDRESDVLLLGDGPWPEFVNSVWCIKILSPQEMQQMG 436
LARMF +EG+LE+ R GW+LV+ D E D+LLLGD PW EFV V CI+ILSPQE+QQM
Sbjct: 1019 LARMFSIEGQLEERQRIGWKLVYKDHEDDILLLGDDPWEEFVGCVKCIRILSPQEVQQMS 1078
Query: 435 NTGLELLNSVP 403
G +L N++P
Sbjct: 1079 LEGCDLGNNIP 1089
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 508,271,503
Number of Sequences: 1393205
Number of extensions: 10836014
Number of successful extensions: 24472
Number of sequences better than 10.0: 122
Number of HSP's better than 10.0 without gapping: 23677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24447
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
