Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004244A_C01 KMC004244A_c01
(816 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180034.1| putative sarcosine oxidase; protein id: At2g245... 262 4e-69
dbj|BAB90345.1| putative sarcosine oxidase [Oryza sativa (japoni... 187 2e-46
ref|NP_057602.1| L-pipecolic acid oxidase [Homo sapiens] gi|2013... 111 1e-23
sp|P79371|SOX_RABIT Peroxisomal sarcosine oxidase (PSO) (L-pipec... 110 2e-23
pir||JC7256 L-pipecolate oxidase (EC 1.-.-.-) - human gi|1428631... 110 2e-23
>ref|NP_180034.1| putative sarcosine oxidase; protein id: At2g24580.1, supported by
cDNA: gi_17529039 [Arabidopsis thaliana]
gi|20139956|sp|Q9SJA7|SOX_ARATH Potential sarcosine
oxidase gi|25320237|pir||D84638 probable sarcosine
oxidase [imported] - Arabidopsis thaliana
gi|4572673|gb|AAD23888.1| putative sarcosine oxidase
[Arabidopsis thaliana] gi|17529040|gb|AAL38730.1|
putative sarcosine oxidase [Arabidopsis thaliana]
gi|21436151|gb|AAM51322.1| putative sarcosine oxidase
[Arabidopsis thaliana]
Length = 416
Score = 262 bits (670), Expect = 4e-69
Identities = 121/178 (67%), Positives = 143/178 (79%), Gaps = 2/178 (1%)
Frame = -1
Query: 816 VKKVGGFELPIQPLETHVSYWRIKEGHEGKFVIGGDFPTFASFGKVYVYGTPTLEFPGLI 637
VK V G + P++PLET V YWRIKEGHE KF I G+FPTFAS+G YVYGTP+LE+PGLI
Sbjct: 217 VKTVAGIDFPVEPLETTVCYWRIKEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLI 276
Query: 636 KVAVHAGRACDPDKRPWGPSVMLGELREWLQGRFSGAVDSSEPVVRQSCLYSMTPDEDFV 457
KVAVH G CDPDKRPWGP V L EL+EW++ RF G VDS PV Q C+YSMTPDEDFV
Sbjct: 277 KVAVHGGYWCDPDKRPWGPGVKLEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFV 336
Query: 456 MDFLGGSFGKDVVVGGGFSGHGFKMAPVIGKILTDLA--VDGGTKEVDMKYFTIQRFK 289
+DFLGG FG+DVVVGGGFSGHGFKMAP +G+IL D+A V+ G V+MK F+++RF+
Sbjct: 337 IDFLGGEFGRDVVVGGGFSGHGFKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFE 394
>dbj|BAB90345.1| putative sarcosine oxidase [Oryza sativa (japonica cultivar-group)]
Length = 414
Score = 187 bits (475), Expect = 2e-46
Identities = 92/184 (50%), Positives = 120/184 (65%), Gaps = 8/184 (4%)
Frame = -1
Query: 816 VKKVGGFELPIQPLETHVSYWRIKEGHEGKFVIGGDFPTFASFGKVYVYGTPTLEFPGLI 637
VK V G +LPIQPL V YW++K G E + FPTF+S G +VYGTP+LE PGLI
Sbjct: 225 VKSVAGVDLPIQPLHALVLYWKVKPGRERELAAEAGFPTFSSHGDPHVYGTPSLELPGLI 284
Query: 636 KVAVHAGRACDPDKRPW--GPSVMLGELREWLQGRFSGAVDSSE-PVVRQSCLYSMTPDE 466
K+ G CDPD R W G + W++ V+++ PVVRQ C+YSMTPD+
Sbjct: 285 KINYDGGPPCDPDGRDWAGGGGDAASRVARWIEEFMPDHVEAAGGPVVRQPCMYSMTPDK 344
Query: 465 DFVMDFLGGSFGKDVVVGGGFSGHGFKMAPVIGKILTDLAVDGGTKE-----VDMKYFTI 301
DFV+DFLGG FG DVVVG GFSGHGFKM P +G+IL ++A+DG + V++++F I
Sbjct: 345 DFVIDFLGGEFGDDVVVGAGFSGHGFKMGPAVGRILAEMAMDGEARTAAEAGVELRHFRI 404
Query: 300 QRFK 289
RF+
Sbjct: 405 SRFE 408
>ref|NP_057602.1| L-pipecolic acid oxidase [Homo sapiens]
gi|20139946|sp|Q9P0Z9|SOX_HUMAN Peroxisomal sarcosine
oxidase (PSO) (L-pipecolate oxidase) (L-pipecolic acid
oxidase) gi|7157903|gb|AAF37331.1|AF134593_1 L-pipecolic
acid oxidase [Homo sapiens]
Length = 390
Score = 111 bits (277), Expect = 1e-23
Identities = 69/185 (37%), Positives = 101/185 (54%), Gaps = 10/185 (5%)
Frame = -1
Query: 801 GFELPIQPLETHVSYWRIKEGHEGKFVIGGDFPTFASFGKV--YVYGTPTLEFPGLIKVA 628
G E+P+Q L +V YWR E G + + FP F G ++YG PT E+PGL+KV+
Sbjct: 214 GIEMPLQTLRINVCYWR--EMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVS 271
Query: 627 VHAGRACDPDKRPWGPS--------VMLGELREWLQGRFSGAVDSSEPVVRQSCLYSMTP 472
H G DP++R + ++ +R+ L EP V +SC+Y+ TP
Sbjct: 272 YHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDL------KPEPAVIESCMYTNTP 325
Query: 471 DEDFVMDFLGGSFGKDVVVGGGFSGHGFKMAPVIGKILTDLAVDGGTKEVDMKYFTIQRF 292
DE F++D ++V+G GFSGHGFK+APV+GKIL +L++ T D+ F I RF
Sbjct: 326 DEQFILD--RHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LTPSYDLAPFRISRF 382
Query: 291 KVASK 277
+K
Sbjct: 383 PSLAK 387
>sp|P79371|SOX_RABIT Peroxisomal sarcosine oxidase (PSO) (L-pipecolate oxidase)
(L-pipecolic acid oxidase) gi|1857445|gb|AAB48443.1|
sarcosine oxidase [Oryctolagus cuniculus]
Length = 390
Score = 110 bits (276), Expect = 2e-23
Identities = 69/185 (37%), Positives = 100/185 (53%), Gaps = 10/185 (5%)
Frame = -1
Query: 801 GFELPIQPLETHVSYWRIKEGHEGKFVIGGDFPTFASFGKV--YVYGTPTLEFPGLIKVA 628
G E+P+Q L +V YWR E G + + FP F G ++YG PT E+PGL+KV+
Sbjct: 214 GIEMPLQTLRINVCYWR--EMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVS 271
Query: 627 VHAGRACDPDKRPWGPS--------VMLGELREWLQGRFSGAVDSSEPVVRQSCLYSMTP 472
H G DP++R + ++ +R+ L EP V +SC+Y+ TP
Sbjct: 272 YHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDL------KPEPAVIESCMYTNTP 325
Query: 471 DEDFVMDFLGGSFGKDVVVGGGFSGHGFKMAPVIGKILTDLAVDGGTKEVDMKYFTIQRF 292
DE F++D ++V+G GFSGHGFK+APV+GKIL +L++ T D+ F I RF
Sbjct: 326 DEQFILD--RHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LTPSYDLAPFRISRF 382
Query: 291 KVASK 277
K
Sbjct: 383 PSLGK 387
>pir||JC7256 L-pipecolate oxidase (EC 1.-.-.-) - human
gi|14286318|gb|AAH08960.1|AAH08960 Unknown (protein for
MGC:4070) [Homo sapiens]
Length = 390
Score = 110 bits (276), Expect = 2e-23
Identities = 69/185 (37%), Positives = 100/185 (53%), Gaps = 10/185 (5%)
Frame = -1
Query: 801 GFELPIQPLETHVSYWRIKEGHEGKFVIGGDFPTFASFGKV--YVYGTPTLEFPGLIKVA 628
G E+P+Q L +V YWR E G + + FP F G ++YG PT E+PGL+KV+
Sbjct: 214 GIEMPLQTLRINVCYWR--EMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVS 271
Query: 627 VHAGRACDPDKRPWGPS--------VMLGELREWLQGRFSGAVDSSEPVVRQSCLYSMTP 472
H G DP++R + ++ +R+ L EP V +SC+Y+ TP
Sbjct: 272 YHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDL------KPEPAVIESCMYTNTP 325
Query: 471 DEDFVMDFLGGSFGKDVVVGGGFSGHGFKMAPVIGKILTDLAVDGGTKEVDMKYFTIQRF 292
DE F++D ++V+G GFSGHGFK+APV+GKIL +L++ T D+ F I RF
Sbjct: 326 DEQFILD--RHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LTPSYDLAPFRISRF 382
Query: 291 KVASK 277
K
Sbjct: 383 PSLGK 387
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 830,696,411
Number of Sequences: 1393205
Number of extensions: 22521596
Number of successful extensions: 96812
Number of sequences better than 10.0: 979
Number of HSP's better than 10.0 without gapping: 70582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88396
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42016716300
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
