Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004242A_C01 KMC004242A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174496.1| xyloglucan endotransglycosylase (XTR4), putativ... 145 4e-34
gb|AAM67311.1| endoxyloglucan transferase, putative [Arabidopsis... 145 4e-34
pir||S71223 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) XT... 145 4e-34
pir||T05036 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) F1... 136 1e-31
ref|NP_193634.1| xyloglucan endotransglycosylase, putative; prot... 132 3e-30
>ref|NP_174496.1| xyloglucan endotransglycosylase (XTR4), putative; protein id:
At1g32170.1, supported by cDNA: 21403., supported by
cDNA: gi_17065243 [Arabidopsis thaliana]
gi|25313534|pir||B86446 probable endoxyloglucan
transferase [imported] - Arabidopsis thaliana
gi|10801367|gb|AAG23439.1|AC084165_5 endoxyloglucan
transferase, putative [Arabidopsis thaliana]
gi|17065244|gb|AAL32776.1| endoxyloglucan transferase,
putative [Arabidopsis thaliana]
Length = 343
Score = 145 bits (365), Expect = 4e-34
Identities = 75/125 (60%), Positives = 85/125 (68%), Gaps = 2/125 (1%)
Frame = -2
Query: 521 YAPFVTEMKDLVLKGCSVDPIQEVSARELCSDQHADLEEQDYAAVTPLRRLAMRRFRQRY 342
+APFV E K L GCSVDPIQEV CSD LE QDY+++ +R AMRRFRQR+
Sbjct: 217 FAPFVAEFKSFSLDGCSVDPIQEVPMD--CSDSVDFLESQDYSSINSHQRAAMRRFRQRF 274
Query: 341 MYYSYCYDTLRYSVPPPECVIIPAEKQRFKETGRLRFGGSHRRHSRARRSRTSTP--VDE 168
MYYSYCYDTLRY P PECVI+PAEK RFKETGRL+FGG+ R R R + P E
Sbjct: 275 MYYSYCYDTLRYPEPLPECVIVPAEKDRFKETGRLKFGGTEARERRRNRRQQRRPEIEIE 334
Query: 167 SDQGD 153
SD D
Sbjct: 335 SDPDD 339
>gb|AAM67311.1| endoxyloglucan transferase, putative [Arabidopsis thaliana]
Length = 343
Score = 145 bits (365), Expect = 4e-34
Identities = 75/125 (60%), Positives = 85/125 (68%), Gaps = 2/125 (1%)
Frame = -2
Query: 521 YAPFVTEMKDLVLKGCSVDPIQEVSARELCSDQHADLEEQDYAAVTPLRRLAMRRFRQRY 342
+APFV E K L GCSVDPIQEV CSD LE QDY+++ +R AMRRFRQR+
Sbjct: 217 FAPFVAEFKSFSLDGCSVDPIQEVPMD--CSDSVDFLESQDYSSINSHQRAAMRRFRQRF 274
Query: 341 MYYSYCYDTLRYSVPPPECVIIPAEKQRFKETGRLRFGGSHRRHSRARRSRTSTP--VDE 168
MYYSYCYDTLRY P PECVI+PAEK RFKETGRL+FGG+ R R R + P E
Sbjct: 275 MYYSYCYDTLRYPEPLPECVIVPAEKDRFKETGRLKFGGTEARERRRNRRQQRRPEIEIE 334
Query: 167 SDQGD 153
SD D
Sbjct: 335 SDPDD 339
>pir||S71223 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) XTR-4 -
Arabidopsis thaliana (fragment)
gi|1244754|gb|AAB18365.1| xyloglucan
endotransglycosylase-related protein
Length = 341
Score = 145 bits (365), Expect = 4e-34
Identities = 75/125 (60%), Positives = 85/125 (68%), Gaps = 2/125 (1%)
Frame = -2
Query: 521 YAPFVTEMKDLVLKGCSVDPIQEVSARELCSDQHADLEEQDYAAVTPLRRLAMRRFRQRY 342
+APFV E K L GCSVDPIQEV CSD LE QDY+++ +R AMRRFRQR+
Sbjct: 215 FAPFVAEFKSFSLDGCSVDPIQEVPMD--CSDSVDFLESQDYSSINSHQRAAMRRFRQRF 272
Query: 341 MYYSYCYDTLRYSVPPPECVIIPAEKQRFKETGRLRFGGSHRRHSRARRSRTSTP--VDE 168
MYYSYCYDTLRY P PECVI+PAEK RFKETGRL+FGG+ R R R + P E
Sbjct: 273 MYYSYCYDTLRYPEPLPECVIVPAEKDRFKETGRLKFGGTEARERRRNRRQQRRPEIEIE 332
Query: 167 SDQGD 153
SD D
Sbjct: 333 SDPDD 337
>pir||T05036 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) F13C5.160 -
Arabidopsis thaliana gi|2832627|emb|CAA16756.1|
xyloglucan endo-transglycosylase-like protein
[Arabidopsis thaliana] gi|7268693|emb|CAB78901.1|
xyloglucan endo-transglycosylase-like protein
[Arabidopsis thaliana]
Length = 338
Score = 136 bits (343), Expect = 1e-31
Identities = 65/123 (52%), Positives = 86/123 (69%), Gaps = 3/123 (2%)
Frame = -2
Query: 521 YAPFVTEMKDLVLKGCSVDPIQEVSARELCSDQHADLEEQDYAAVTPLRRLAMRRFRQRY 342
++PFV+E KD+ L GC+++ CS L DY+ ++P + AMRRFR+RY
Sbjct: 225 FSPFVSEFKDIALDGCNIN----------CSVSDQFLMSNDYSTISPKQATAMRRFRERY 274
Query: 341 MYYSYCYDTLRYSVPPPECVIIPAEKQRFKETGRLRFGGSHRRHSRARRSR---TSTPVD 171
MYYSYCYDT+RYSVPPPECVI+ AEK RF++TGRL+FGGSH + +AR+ R STPV
Sbjct: 275 MYYSYCYDTIRYSVPPPECVIVTAEKNRFRDTGRLKFGGSHPKVHKARKKRRRNRSTPVV 334
Query: 170 ESD 162
+D
Sbjct: 335 SAD 337
>ref|NP_193634.1| xyloglucan endotransglycosylase, putative; protein id: At4g18990.1
[Arabidopsis thaliana] gi|22136636|gb|AAM91637.1|
putative xyloglucan endo-transglycosylase [Arabidopsis
thaliana]
Length = 357
Score = 132 bits (331), Expect = 3e-30
Identities = 67/132 (50%), Positives = 88/132 (65%), Gaps = 12/132 (9%)
Frame = -2
Query: 521 YAPFVTEMKDLVLKGCSVDPI--QEVSAREL-------CSDQHADLEEQDYAAVTPLRRL 369
++PFV+E KD+ L GC+V E + + CS L DY+ ++P +
Sbjct: 225 FSPFVSEFKDIALDGCNVSDSFPGENNNNNIGNYNNINCSVSDQFLMSNDYSTISPKQAT 284
Query: 368 AMRRFRQRYMYYSYCYDTLRYSVPPPECVIIPAEKQRFKETGRLRFGGSHRRHSRARRSR 189
AMRRFR+RYMYYSYCYDT+RYSVPPPECVI+ AEK RF++TGRL+FGGSH + +AR+ R
Sbjct: 285 AMRRFRERYMYYSYCYDTIRYSVPPPECVIVTAEKNRFRDTGRLKFGGSHPKVHKARKKR 344
Query: 188 ---TSTPVDESD 162
STPV +D
Sbjct: 345 RRNRSTPVVSAD 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,523,109
Number of Sequences: 1393205
Number of extensions: 9340835
Number of successful extensions: 29153
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 28199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29107
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
