Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004240A_C01 KMC004240A_c01
(1085 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39... 492 e-138
ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25... 491 e-137
gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana] 487 e-136
sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5 486 e-136
dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa ... 479 e-134
>ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39740.1, supported by
cDNA: gi_19310481, supported by cDNA: gi_20260447
[Arabidopsis thaliana] gi|19884108|sp|P49227|RL5_ARATH
60S ribosomal protein L5 gi|10177974|dbj|BAB11380.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|19310482|gb|AAL84975.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|20260448|gb|AAM13122.1|
ribosomal protein L5 - like [Arabidopsis thaliana]
Length = 301
Score = 492 bits (1266), Expect = e-138
Identities = 238/299 (79%), Positives = 267/299 (88%)
Frame = -3
Query: 1083 FRQSQKSRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITA 904
F +S KS AYFKR+QVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI A
Sbjct: 3 FVKSSKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62
Query: 903 QIISASXAGDIVLASAYAHELPHYGXEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGN 724
QI+SAS AGDIV ASAYAHELP YG VGLTNYAAAYCTGLLLARRVLK LEMD+EYEGN
Sbjct: 63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122
Query: 723 VEATGEDYSVEPAETRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 544
VEATGED+SVEP ++RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182
Query: 543 EKEKKELDPEVHRKYIFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEDLYKKV 364
KE K+LD E+HR YI+GGHV+ YMK L EDEPEK Q+HFS YIK+G+EA+ +E++YKKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKV 242
Query: 363 HAAIRADPTIKKAEKKPPKKSKRYNLKKLTYEERKAKLIARLQALNSAAGADEDEEDDE 187
HAAIRA+P KK EK PK+ KRYNLKKLTYEERK KLI R++ALN A G D+DE+D+E
Sbjct: 243 HAAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEE 301
>ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25520.1, supported by
cDNA: 32753., supported by cDNA: gi_15809787, supported
by cDNA: gi_17473631 [Arabidopsis thaliana]
gi|15809788|gb|AAL06822.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|17473632|gb|AAL38279.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|20148745|gb|AAM10263.1| 60S ribosomal protein L5
[Arabidopsis thaliana] gi|22530962|gb|AAM96985.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|23198406|gb|AAN15730.1| putative ribosomal protein
[Arabidopsis thaliana] gi|27311643|gb|AAO00787.1|
ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 491 bits (1263), Expect = e-137
Identities = 239/299 (79%), Positives = 266/299 (88%)
Frame = -3
Query: 1083 FRQSQKSRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITA 904
F +S KS AYFKR+QVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI A
Sbjct: 3 FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62
Query: 903 QIISASXAGDIVLASAYAHELPHYGXEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGN 724
QI+SAS AGDIV ASAYAHELP YG VGLTNYAAAYCTGLLLARRVLK LEMD+EYEGN
Sbjct: 63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122
Query: 723 VEATGEDYSVEPAETRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 544
VEATGED+SVEP ++RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182
Query: 543 EKEKKELDPEVHRKYIFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEDLYKKV 364
KE K+LD E+HR YI+GGHV+ YMK L EDEPEK Q+HFS YIK+G+EA+ +E+LYKKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKV 242
Query: 363 HAAIRADPTIKKAEKKPPKKSKRYNLKKLTYEERKAKLIARLQALNSAAGADEDEEDDE 187
HAAIRADP KK K PK+ KRYNLKKLTYEERK KLI R++ALN A G D+DE+D+E
Sbjct: 243 HAAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEE 301
>gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 487 bits (1254), Expect = e-136
Identities = 236/299 (78%), Positives = 265/299 (87%)
Frame = -3
Query: 1083 FRQSQKSRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITA 904
F +S KS AYFKR+QVKF+RRR+GKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDI A
Sbjct: 3 FVKSTKSNAYFKRYQVKFRRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIVA 62
Query: 903 QIISASXAGDIVLASAYAHELPHYGXEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGN 724
QI+SAS AGDIV ASAYAHELP YG VGLTNYAAAYCTGLLLARRVLK LEMD+EYEGN
Sbjct: 63 QIVSASIAGDIVKASAYAHELPQYGLTVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGN 122
Query: 723 VEATGEDYSVEPAETRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 544
VEATGED+SVEP ++RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 123 VEATGEDFSVEPTDSRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 182
Query: 543 EKEKKELDPEVHRKYIFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEDLYKKV 364
KE K+LD E+HR YI+GGHV+ YMK L EDEPEK Q+HFS YIK+G+EA+ +E+LYKKV
Sbjct: 183 HKENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKV 242
Query: 363 HAAIRADPTIKKAEKKPPKKSKRYNLKKLTYEERKAKLIARLQALNSAAGADEDEEDDE 187
HAAIRA P +K K PK+ KRYNLKKLTYEERK KLI R++ALN A G D+DE+D++
Sbjct: 243 HAAIRAXPNXRKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGGDDDDEDDEZ 301
>sp|P49625|RL5_ORYSA 60S RIBOSOMAL PROTEIN L5
Length = 304
Score = 486 bits (1251), Expect = e-136
Identities = 234/301 (77%), Positives = 272/301 (89%), Gaps = 2/301 (0%)
Frame = -3
Query: 1083 FRQSQKSRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITA 904
F ++QK+ AY+KRFQVKFKRRR+GKTDYRARIRL NQDKNKYNTPKYRFVVRFTNKDITA
Sbjct: 4 FVKTQKTNAYYKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFVVRFTNKDITA 63
Query: 903 QIISASXAGDIVLASAYAHELPHYGXEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGN 724
QI+ A+ AGDIV+A+AY+HELP YG EVGLTNYAAAYCTGLLLARRVLK +D+EYEGN
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLKLRGLDQEYEGN 123
Query: 723 VEATGEDYSVEPAETRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 544
+EATGEDY VEPA+ RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 124 IEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183
Query: 543 EKEKKELDPEVHRKYIFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEDLYKKV 364
+K++K+LD ++HRKYI+GGHVA YM+++ E+EPEK+Q+HFSEY+K+GI+ADG+E LYKKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMEALYKKV 243
Query: 363 HAAIRADPTIKKAEKKPPKKSKRYNLKKLTYEERKAKLIARLQALNSAAGADED--EEDD 190
HAAIRADP K+ KK P KRYNLKKLTYE+RKA L+ RL ALNS+AGAD+D EEDD
Sbjct: 244 HAAIRADPYHAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDD 303
Query: 189 E 187
E
Sbjct: 304 E 304
>dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)] gi|22093591|dbj|BAC06887.1| putative 60S
ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)]
Length = 304
Score = 479 bits (1233), Expect = e-134
Identities = 233/301 (77%), Positives = 270/301 (89%), Gaps = 2/301 (0%)
Frame = -3
Query: 1083 FRQSQKSRAYFKRFQVKFKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITA 904
F ++QK+ AYFKRFQVKFKRRR+GKTDYRARIRL NQDKNKYNTPKYRFV TNKDITA
Sbjct: 7 FVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITA 63
Query: 903 QIISASXAGDIVLASAYAHELPHYGXEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGN 724
QI+ A+ AGDIV+A+AY+HELP YG EVGLTNYAAAYCTGLLLARRVL +D+EYEGN
Sbjct: 64 QIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGN 123
Query: 723 VEATGEDYSVEPAETRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 544
VEATGEDY VEPA+ RRPFRALLDVGL++TTTGNRVFGALKGALDGGLDIPHSDKRFAGF
Sbjct: 124 VEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGF 183
Query: 543 EKEKKELDPEVHRKYIFGGHVAAYMKTLIEDEPEKYQSHFSEYIKRGIEADGLEDLYKKV 364
+K++K+LD ++HRKYI+GGHVA YM+++ E+EPEK+Q+HFSEY+K+GI+ADG+E LYKKV
Sbjct: 184 KKDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKV 243
Query: 363 HAAIRADPTIKKAEKKPPKKSKRYNLKKLTYEERKAKLIARLQALNSAAGADED--EEDD 190
HAAIRADPT+ K+ KK P KRYNLKKLTYE+RKA L+ RL ALNS+AGAD+D EEDD
Sbjct: 244 HAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDD 303
Query: 189 E 187
E
Sbjct: 304 E 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 875,485,643
Number of Sequences: 1393205
Number of extensions: 19574949
Number of successful extensions: 63881
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 59037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63474
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 65395842999
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
