Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004236A_C01 KMC004236A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191584.1| regulatory subunit of protein kinase CK2; prote... 88 9e-17
dbj|BAC66224.1| OJ1058_B11.17 [Oryza sativa (japonica cultivar-g... 86 3e-16
gb|AAO72648.1| possible protein kinase CK2 regulatory subunit [O... 86 3e-16
gb|AAK97735.1| At2g44680/F16B22.17 [Arabidopsis thaliana] gi|169... 85 8e-16
gb|AAG36870.1|AF239817_1 protein kinase CK2 regulatory subunit C... 84 2e-15
>ref|NP_191584.1| regulatory subunit of protein kinase CK2; protein id: At3g60250.1,
supported by cDNA: gi_3493610 [Arabidopsis thaliana]
gi|6016427|sp|O81275|KC2D_ARATH Casein kinase II beta-3
chain (CK II) gi|11280587|pir||T49220 casein kinase II
(EC 2.7.1.-) beta chain CKB3 [validated] - Arabidopsis
thaliana gi|3493611|gb|AAC33896.1| regulatory subunit of
protein kinase CK2; CK2 beta-subunit [Arabidopsis
thaliana] gi|7576201|emb|CAB87862.1| regulatory subunit
of protein kinase CK2 [Arabidopsis thaliana]
Length = 276
Score = 87.8 bits (216), Expect = 9e-17
Identities = 36/43 (83%), Positives = 41/43 (94%)
Frame = -2
Query: 535 DIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKIHKP 407
+IDGAYFGTTFPHLFLMTYG LKPQKP+Q YVP++FGFK+HKP
Sbjct: 234 NIDGAYFGTTFPHLFLMTYGNLKPQKPTQSYVPKIFGFKVHKP 276
>dbj|BAC66224.1| OJ1058_B11.17 [Oryza sativa (japonica cultivar-group)]
Length = 288
Score = 86.3 bits (212), Expect = 3e-16
Identities = 38/43 (88%), Positives = 40/43 (92%)
Frame = -2
Query: 535 DIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKIHKP 407
+IDGAYFGTTFPHLFLMTY LKPQKPSQ YVPRVFGFK+HKP
Sbjct: 246 NIDGAYFGTTFPHLFLMTYEHLKPQKPSQRYVPRVFGFKLHKP 288
>gb|AAO72648.1| possible protein kinase CK2 regulatory subunit [Oryza sativa
(japonica cultivar-group)]
Length = 244
Score = 86.3 bits (212), Expect = 3e-16
Identities = 38/43 (88%), Positives = 40/43 (92%)
Frame = -2
Query: 535 DIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKIHKP 407
+IDGAYFGTTFPHLFLMTY LKPQKPSQ YVPRVFGFK+HKP
Sbjct: 202 NIDGAYFGTTFPHLFLMTYEHLKPQKPSQRYVPRVFGFKLHKP 244
>gb|AAK97735.1| At2g44680/F16B22.17 [Arabidopsis thaliana]
gi|16974421|gb|AAL31136.1| At2g44680/F16B22.17
[Arabidopsis thaliana] gi|17065018|gb|AAL32663.1|
putative casein kinase II beta subunit [Arabidopsis
thaliana] gi|20259992|gb|AAM13343.1| putative casein
kinase II beta subunit [Arabidopsis thaliana]
Length = 282
Score = 84.7 bits (208), Expect = 8e-16
Identities = 34/43 (79%), Positives = 39/43 (90%)
Frame = -2
Query: 541 YPDIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKIH 413
Y DIDGAYFGTTFPHLFLM YG +KPQKP+Q YVP++FGFK+H
Sbjct: 237 YQDIDGAYFGTTFPHLFLMAYGNMKPQKPAQNYVPKIFGFKVH 279
>gb|AAG36870.1|AF239817_1 protein kinase CK2 regulatory subunit CK2B2 [Zea mays]
Length = 260
Score = 83.6 bits (205), Expect = 2e-15
Identities = 36/43 (83%), Positives = 39/43 (89%)
Frame = -2
Query: 535 DIDGAYFGTTFPHLFLMTYGQLKPQKPSQGYVPRVFGFKIHKP 407
+IDG+YFGTTFPHLFLMTY LKPQKPSQ Y PRVFGFK+HKP
Sbjct: 217 NIDGSYFGTTFPHLFLMTYPHLKPQKPSQQYTPRVFGFKLHKP 259
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,961,257
Number of Sequences: 1393205
Number of extensions: 9472450
Number of successful extensions: 20782
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 20188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20769
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
