Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004233A_C01 KMC004233A_c01
(702 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190813.1| putative protein; protein id: At3g52450.1 [Arab... 135 4e-31
ref|NP_181137.1| unknown protein; protein id: At2g35930.1 [Arabi... 129 3e-29
gb|AAO64764.1| At2g35930 [Arabidopsis thaliana] 129 3e-29
dbj|BAC01203.1| P0505D12.10 [Oryza sativa (japonica cultivar-gro... 108 6e-23
ref|NP_566402.1| expressed protein; protein id: At3g11840.1, sup... 87 2e-16
>ref|NP_190813.1| putative protein; protein id: At3g52450.1 [Arabidopsis thaliana]
gi|7486004|pir||T08454 hypothetical protein F22O6.170 -
Arabidopsis thaliana gi|4886282|emb|CAB43434.1| putative
protein [Arabidopsis thaliana]
Length = 435
Score = 135 bits (341), Expect = 4e-31
Identities = 66/89 (74%), Positives = 76/89 (85%)
Frame = -2
Query: 701 AIVSKKILRVSTMANDRAVRILLSVSRFSAKPSVLQEMVQFGVVAKLCLVLQVDSGNKAK 522
A+VSKKILRVS + ++RAVR+LLSV RF A PS+LQEM+Q GVVAKLCLVLQV GNK K
Sbjct: 346 AVVSKKILRVSQITSERAVRVLLSVGRFCATPSLLQEMLQLGVVAKLCLVLQVSCGNKTK 405
Query: 521 EKAREILKLHARVWRNSPCIPSNLLASYP 435
EKA+E+LKLHARVWR SPC+P NL SYP
Sbjct: 406 EKAKELLKLHARVWRESPCVPRNLYDSYP 434
>ref|NP_181137.1| unknown protein; protein id: At2g35930.1 [Arabidopsis thaliana]
gi|25408431|pir||G84774 hypothetical protein At2g35930
[imported] - Arabidopsis thaliana
gi|4510376|gb|AAD21464.1| unknown protein [Arabidopsis
thaliana]
Length = 406
Score = 129 bits (325), Expect = 3e-29
Identities = 61/89 (68%), Positives = 75/89 (83%)
Frame = -2
Query: 701 AIVSKKILRVSTMANDRAVRILLSVSRFSAKPSVLQEMVQFGVVAKLCLVLQVDSGNKAK 522
A+V KKILRVS A+DRAVR+LLSV RF A P++L EM+Q GVVAKLCLVLQV G K K
Sbjct: 317 AVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTK 376
Query: 521 EKAREILKLHARVWRNSPCIPSNLLASYP 435
EKA+E+LKLHARVW++SPC+P N++ +YP
Sbjct: 377 EKAKELLKLHARVWKDSPCLPKNMILAYP 405
>gb|AAO64764.1| At2g35930 [Arabidopsis thaliana]
Length = 411
Score = 129 bits (325), Expect = 3e-29
Identities = 61/89 (68%), Positives = 75/89 (83%)
Frame = -2
Query: 701 AIVSKKILRVSTMANDRAVRILLSVSRFSAKPSVLQEMVQFGVVAKLCLVLQVDSGNKAK 522
A+V KKILRVS A+DRAVR+LLSV RF A P++L EM+Q GVVAKLCLVLQV G K K
Sbjct: 322 AVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTK 381
Query: 521 EKAREILKLHARVWRNSPCIPSNLLASYP 435
EKA+E+LKLHARVW++SPC+P N++ +YP
Sbjct: 382 EKAKELLKLHARVWKDSPCLPKNMILAYP 410
>dbj|BAC01203.1| P0505D12.10 [Oryza sativa (japonica cultivar-group)]
Length = 462
Score = 108 bits (271), Expect = 6e-23
Identities = 55/91 (60%), Positives = 70/91 (76%), Gaps = 1/91 (1%)
Frame = -2
Query: 701 AIVSKKILRVSTMANDRAVRILLSVSRFSAKPSVLQEMVQFGVVAKLCLVLQVDS-GNKA 525
A+V KK+LRVS A++RAVR+L SV+R +A P+VLQEM Q GVV KLCL L+ + G K
Sbjct: 372 AVVGKKVLRVSEAASERAVRVLRSVARHAATPAVLQEMAQCGVVGKLCLALRSEQCGVKT 431
Query: 524 KEKAREILKLHARVWRNSPCIPSNLLASYPT 432
KEKA E+LKLH+RVWR SPC+ + LA YP+
Sbjct: 432 KEKAHEVLKLHSRVWRASPCLSPSFLALYPS 462
>ref|NP_566402.1| expressed protein; protein id: At3g11840.1, supported by cDNA:
100676. [Arabidopsis thaliana]
Length = 470
Score = 87.4 bits (215), Expect = 2e-16
Identities = 45/85 (52%), Positives = 59/85 (68%)
Frame = -2
Query: 701 AIVSKKILRVSTMANDRAVRILLSVSRFSAKPSVLQEMVQFGVVAKLCLVLQVDSGNKAK 522
A+V+K++LRVS A+DRA+ IL +VS+FS + V++EMV G V KLC VL +D G K
Sbjct: 373 AVVTKRLLRVSPAADDRAISILTTVSKFSPENMVVEEMVNVGTVEKLCSVLGMDCGLNLK 432
Query: 521 EKAREILKLHARVWRNSPCIPSNLL 447
EKA+EILK H W+ PCI LL
Sbjct: 433 EKAKEILKDHFDEWKKFPCIDITLL 457
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 594,556,157
Number of Sequences: 1393205
Number of extensions: 12801698
Number of successful extensions: 38122
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 36545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38073
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 32250355128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
