Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004229A_C01 KMC004229A_c01
(603 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC43845.1| urease [Glycine max] 228 4e-59
emb|CAC43859.1| urease [Solanum tuberosum] 208 4e-53
emb|CAC43858.1| urease [Solanum tuberosum] 208 4e-53
emb|CAC43857.1| urease [Solanum tuberosum] gi|14599437|emb|CAC43... 206 1e-52
ref|NP_176922.1| putative urease; protein id: At1g67550.1 [Arabi... 201 5e-51
>emb|CAC43845.1| urease [Glycine max]
Length = 837
Score = 228 bits (582), Expect = 4e-59
Identities = 114/137 (83%), Positives = 124/137 (90%)
Frame = -1
Query: 603 LVLWKPSFFGAKPDMXI*AGQIAWANMVDPNASIPTPEPVIMRPIFGAFAKAGSSHSITF 424
LVLWKPSFFGAKP+M I G++A+ANM DPNASIPTPEPVIMRP+FGAF KAGSSHSI F
Sbjct: 702 LVLWKPSFFGAKPEMVIKGGEVAYANMGDPNASIPTPEPVIMRPMFGAFGKAGSSHSIAF 761
Query: 423 VSKAALDEGVRTSYGLNQRVEAVDSNVRKLTQLDMKLNDALPQITVDPDTYTVTADGAVL 244
VSKAALDEGV+ SYGLN+RVEAV NVRKLT+ DMKLND LPQITVDP+TYTVTADG VL
Sbjct: 762 VSKAALDEGVKASYGLNKRVEAV-KNVRKLTKRDMKLNDTLPQITVDPETYTVTADGEVL 820
Query: 243 TCTAAASVPLSRNYFLF 193
TCTAA +VPLSRNYFLF
Sbjct: 821 TCTAAKTVPLSRNYFLF 837
>emb|CAC43859.1| urease [Solanum tuberosum]
Length = 834
Score = 208 bits (530), Expect = 4e-53
Identities = 103/137 (75%), Positives = 118/137 (85%)
Frame = -1
Query: 603 LVLWKPSFFGAKPDMXI*AGQIAWANMVDPNASIPTPEPVIMRPIFGAFAKAGSSHSITF 424
LV+WKPSFFGAKP+M I G IAW+NM DPNASIPTPEPV MRP+FGAF+KA SS+SITF
Sbjct: 699 LVVWKPSFFGAKPEMVIKGGVIAWSNMGDPNASIPTPEPVTMRPMFGAFSKAASSNSITF 758
Query: 423 VSKAALDEGVRTSYGLNQRVEAVDSNVRKLTQLDMKLNDALPQITVDPDTYTVTADGAVL 244
VSKAALD G++ SY LN+RVEAV +NVR +++LDMKLNDALP I VDP+TYTVTADG L
Sbjct: 759 VSKAALDAGIKDSYRLNKRVEAV-TNVRNISKLDMKLNDALPDIKVDPETYTVTADGTAL 817
Query: 243 TCTAAASVPLSRNYFLF 193
TC A +VPLSRNYFLF
Sbjct: 818 TCPPATTVPLSRNYFLF 834
>emb|CAC43858.1| urease [Solanum tuberosum]
Length = 716
Score = 208 bits (530), Expect = 4e-53
Identities = 103/137 (75%), Positives = 118/137 (85%)
Frame = -1
Query: 603 LVLWKPSFFGAKPDMXI*AGQIAWANMVDPNASIPTPEPVIMRPIFGAFAKAGSSHSITF 424
LV+WKPSFFGAKP+M I G IAW+NM DPNASIPTPEPV MRP+FGAF+KA SS+SITF
Sbjct: 581 LVVWKPSFFGAKPEMVIKGGVIAWSNMGDPNASIPTPEPVTMRPMFGAFSKAASSNSITF 640
Query: 423 VSKAALDEGVRTSYGLNQRVEAVDSNVRKLTQLDMKLNDALPQITVDPDTYTVTADGAVL 244
VSKAALD G++ SY LN+RVEAV +NVR +++LDMKLNDALP I VDP+TYTVTADG L
Sbjct: 641 VSKAALDAGIKDSYRLNKRVEAV-TNVRNISKLDMKLNDALPDIKVDPETYTVTADGTAL 699
Query: 243 TCTAAASVPLSRNYFLF 193
TC A +VPLSRNYFLF
Sbjct: 700 TCPPATTVPLSRNYFLF 716
>emb|CAC43857.1| urease [Solanum tuberosum] gi|14599437|emb|CAC43860.1| urease
[Solanum tuberosum]
Length = 834
Score = 206 bits (525), Expect = 1e-52
Identities = 102/137 (74%), Positives = 117/137 (84%)
Frame = -1
Query: 603 LVLWKPSFFGAKPDMXI*AGQIAWANMVDPNASIPTPEPVIMRPIFGAFAKAGSSHSITF 424
LV+WKPSFFGAKP+M I G IAW+NM DPNASIPTPEPV MRP+FGAF+KA SS+SI F
Sbjct: 699 LVVWKPSFFGAKPEMVIKGGVIAWSNMGDPNASIPTPEPVTMRPMFGAFSKAASSNSIAF 758
Query: 423 VSKAALDEGVRTSYGLNQRVEAVDSNVRKLTQLDMKLNDALPQITVDPDTYTVTADGAVL 244
VSKAALD G++ SY LN+RVEAV +NVR +++LDMKLNDALP I VDP+TYTVTADG L
Sbjct: 759 VSKAALDAGIKDSYRLNKRVEAV-TNVRNISKLDMKLNDALPDIKVDPETYTVTADGTAL 817
Query: 243 TCTAAASVPLSRNYFLF 193
TC A +VPLSRNYFLF
Sbjct: 818 TCPPATTVPLSRNYFLF 834
>ref|NP_176922.1| putative urease; protein id: At1g67550.1 [Arabidopsis thaliana]
gi|25290122|pir||A96699 probable urease F12B7.10
[imported] - Arabidopsis thaliana
gi|12324683|gb|AAG52306.1|AC011020_13 putative urease
[Arabidopsis thaliana]
Length = 838
Score = 201 bits (512), Expect = 5e-51
Identities = 101/137 (73%), Positives = 116/137 (83%)
Frame = -1
Query: 603 LVLWKPSFFGAKPDMXI*AGQIAWANMVDPNASIPTPEPVIMRPIFGAFAKAGSSHSITF 424
LV+W+P+FFGAKP+M I G IAWANM D NASIPTPEPVI RP+FGAF KAGS +S+ F
Sbjct: 703 LVIWQPAFFGAKPEMIIKGGNIAWANMGDANASIPTPEPVISRPMFGAFGKAGSENSVAF 762
Query: 423 VSKAALDEGVRTSYGLNQRVEAVDSNVRKLTQLDMKLNDALPQITVDPDTYTVTADGAVL 244
VSKAAL +GV+ YGL +RV AV SNVR+LT+LDMKLNDALP+ITVDP+TY VTA+G VL
Sbjct: 763 VSKAALRKGVKELYGLKKRVVAV-SNVRQLTKLDMKLNDALPEITVDPETYVVTANGEVL 821
Query: 243 TCTAAASVPLSRNYFLF 193
TC A SVPLSRNYFLF
Sbjct: 822 TCAPADSVPLSRNYFLF 838
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 553,083,907
Number of Sequences: 1393205
Number of extensions: 12749392
Number of successful extensions: 31811
Number of sequences better than 10.0: 154
Number of HSP's better than 10.0 without gapping: 30507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31645
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
