Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004228A_C01 KMC004228A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF00632.1|AC009540_9 unknown protein [Arabidopsis thaliana] 66 2e-10
ref|NP_566214.1| expressed protein; protein id: At3g03860.1, sup... 66 2e-10
dbj|BAB09470.1| contains similarity to protein disulfide isomera... 60 1e-08
gb|AAM60945.1| contains similarity to protein disulfide isomeras... 60 1e-08
ref|NP_568360.1| putative protein; protein id: At5g18120.1, supp... 60 1e-08
>gb|AAF00632.1|AC009540_9 unknown protein [Arabidopsis thaliana]
Length = 318
Score = 66.2 bits (160), Expect = 2e-10
Identities = 29/53 (54%), Positives = 42/53 (78%)
Frame = -3
Query: 463 VIGRVLNLIDVRSVWTQLRLCKTRNFHERARSVRVWASSLASVSLGKSSSSSA 305
+ R ++++DVR +W +L L KTRNFHERA++ + WASSLASVSLG++SS +
Sbjct: 266 LFNRGIHMVDVRRLWLKLSLVKTRNFHERAKNAQAWASSLASVSLGQTSSDQS 318
>ref|NP_566214.1| expressed protein; protein id: At3g03860.1, supported by cDNA:
gi_16604552, supported by cDNA: gi_20259148 [Arabidopsis
thaliana] gi|16604553|gb|AAL24078.1| unknown protein
[Arabidopsis thaliana] gi|20259149|gb|AAM14290.1|
unknown protein [Arabidopsis thaliana]
Length = 300
Score = 66.2 bits (160), Expect = 2e-10
Identities = 29/53 (54%), Positives = 42/53 (78%)
Frame = -3
Query: 463 VIGRVLNLIDVRSVWTQLRLCKTRNFHERARSVRVWASSLASVSLGKSSSSSA 305
+ R ++++DVR +W +L L KTRNFHERA++ + WASSLASVSLG++SS +
Sbjct: 248 LFNRGIHMVDVRRLWLKLSLVKTRNFHERAKNAQAWASSLASVSLGQTSSDQS 300
>dbj|BAB09470.1| contains similarity to protein disulfide isomerase-related
protein~gene_id:MRG7.8 [Arabidopsis thaliana]
Length = 303
Score = 60.1 bits (144), Expect = 1e-08
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = -3
Query: 463 VIGRVLNLIDVRSVWTQLRLCKTRNFHERARSVRVWASSLASVSLGKSSSSSA 305
+ GR L++IDVR +W +LRL KTRNF ERA+ ++LASVSLGKSSS SA
Sbjct: 257 LFGRALHMIDVRRLWIKLRLTKTRNFQERAK------NALASVSLGKSSSQSA 303
>gb|AAM60945.1| contains similarity to protein disulfide isomerase-related protein
[Arabidopsis thaliana]
Length = 289
Score = 60.1 bits (144), Expect = 1e-08
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = -3
Query: 463 VIGRVLNLIDVRSVWTQLRLCKTRNFHERARSVRVWASSLASVSLGKSSSSSA 305
+ GR L++IDVR +W +LRL KTRNF ERA+ ++LASVSLGKSSS SA
Sbjct: 243 LFGRALHMIDVRRLWIKLRLTKTRNFQERAK------NALASVSLGKSSSQSA 289
>ref|NP_568360.1| putative protein; protein id: At5g18120.1, supported by cDNA:
105494. [Arabidopsis thaliana]
gi|27754444|gb|AAO22670.1| unknown protein [Arabidopsis
thaliana] gi|28394041|gb|AAO42428.1| unknown protein
[Arabidopsis thaliana]
Length = 289
Score = 60.1 bits (144), Expect = 1e-08
Identities = 32/53 (60%), Positives = 40/53 (75%)
Frame = -3
Query: 463 VIGRVLNLIDVRSVWTQLRLCKTRNFHERARSVRVWASSLASVSLGKSSSSSA 305
+ GR L++IDVR +W +LRL KTRNF ERA+ ++LASVSLGKSSS SA
Sbjct: 243 LFGRALHMIDVRRLWIKLRLTKTRNFQERAK------NALASVSLGKSSSQSA 289
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 385,047,448
Number of Sequences: 1393205
Number of extensions: 7813589
Number of successful extensions: 17927
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 17220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17850
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
