Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004225A_C01 KMC004225A_c01
(700 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL37041.1|AF303583_1 3-hydroxy-3-methylglutaryl coenzyme A [... 181 1e-44
sp|Q03163|HMDH_CATRO 3-hydroxy-3-methylglutaryl-coenzyme A reduc... 175 5e-43
sp|P29057|HMD1_HEVBR 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUC... 174 8e-43
dbj|BAA36291.1| HMG-CoA reductase [Cucumis melo] 174 8e-43
sp|P48021|HMDH_CAMAC 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUC... 172 3e-42
>gb|AAL37041.1|AF303583_1 3-hydroxy-3-methylglutaryl coenzyme A [Pisum sativum]
Length = 577
Score = 181 bits (458), Expect = 1e-44
Identities = 93/97 (95%), Positives = 97/97 (99%)
Frame = -3
Query: 698 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKEAPGANSRLLATIVAG 519
VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASK++PGANSRLLATIVAG
Sbjct: 481 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRLLATIVAG 540
Query: 518 SVLAGELSLMSAIAAGQLVKSHMKYNRSSKDISKIVS 408
SVLAGELSLMSAIAAGQLVKSHMKYNRSS+DISK+VS
Sbjct: 541 SVLAGELSLMSAIAAGQLVKSHMKYNRSSRDISKVVS 577
>sp|Q03163|HMDH_CATRO 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
gi|7431205|pir||T09967 hydroxymethylglutaryl-CoA
reductase (NADPH2) (EC 1.1.1.34) - Madagascar periwinkle
gi|167488|gb|AAA33108.1| hydroxymethylglutaryl-CoA
reductase gi|445621|prf||1909368A hydroxy methylglutaryl
CoA reductase
Length = 601
Score = 175 bits (444), Expect = 5e-43
Identities = 90/97 (92%), Positives = 95/97 (97%)
Frame = -3
Query: 698 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKEAPGANSRLLATIVAG 519
VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASK++PGANSRLLATIVAG
Sbjct: 498 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKDSPGANSRLLATIVAG 557
Query: 518 SVLAGELSLMSAIAAGQLVKSHMKYNRSSKDISKIVS 408
SVLAGELSLMSAI+AGQLV+SHMKYNRSSKDI+ I S
Sbjct: 558 SVLAGELSLMSAISAGQLVRSHMKYNRSSKDITNIAS 594
>sp|P29057|HMD1_HEVBR 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 1 (HMG-COA
REDUCTASE 1) gi|280399|pir||S14955
hydroxymethylglutaryl-CoA reductase (NADPH2) (EC
1.1.1.34) 1 - Para rubber tree gi|18833|emb|CAA38467.1|
hydroxymethylglutaryl-CoA reductase [Hevea brasiliensis]
gi|18835|emb|CAA38469.1| hydroxymethylglutaryl-CoA
reductase [Hevea brasiliensis]
gi|16417954|gb|AAL18929.1|AF429388_1
hydroxymethylglutaryl coenzyme A reductase [Hevea
brasiliensis]
Length = 575
Score = 174 bits (442), Expect = 8e-43
Identities = 90/97 (92%), Positives = 94/97 (96%)
Frame = -3
Query: 698 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKEAPGANSRLLATIVAG 519
VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGA+KE+PG+NSRLLA IVAG
Sbjct: 479 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGSNSRLLAAIVAG 538
Query: 518 SVLAGELSLMSAIAAGQLVKSHMKYNRSSKDISKIVS 408
SVLAGELSLMSAIAAGQLVKSHMKYNRSSKD+SK S
Sbjct: 539 SVLAGELSLMSAIAAGQLVKSHMKYNRSSKDMSKAAS 575
>dbj|BAA36291.1| HMG-CoA reductase [Cucumis melo]
Length = 587
Score = 174 bits (442), Expect = 8e-43
Identities = 89/97 (91%), Positives = 96/97 (98%)
Frame = -3
Query: 698 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKEAPGANSRLLATIVAG 519
VN+G+DLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKE+PGANSRLLATIVAG
Sbjct: 491 VNNGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGANSRLLATIVAG 550
Query: 518 SVLAGELSLMSAIAAGQLVKSHMKYNRSSKDISKIVS 408
SVLAGELSLMSAIAAGQLV+SHMKYNRSS+D+SK+ S
Sbjct: 551 SVLAGELSLMSAIAAGQLVRSHMKYNRSSRDVSKLES 587
>sp|P48021|HMDH_CAMAC 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE (HMG-COA REDUCTASE)
gi|289881|gb|AAA33040.1| 3-hydroxy-3-methylglutaryl coA
reductase
Length = 593
Score = 172 bits (437), Expect = 3e-42
Identities = 87/97 (89%), Positives = 94/97 (96%)
Frame = -3
Query: 698 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKEAPGANSRLLATIVAG 519
+NDGKDLH+SVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKEAPG+N+RLLATIVAG
Sbjct: 497 INDGKDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKEAPGSNARLLATIVAG 556
Query: 518 SVLAGELSLMSAIAAGQLVKSHMKYNRSSKDISKIVS 408
SVLAGELSLMSAIAAGQLV SHMKYNRS+KD++K S
Sbjct: 557 SVLAGELSLMSAIAAGQLVNSHMKYNRSNKDVTKASS 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,413,016
Number of Sequences: 1393205
Number of extensions: 13267695
Number of successful extensions: 36959
Number of sequences better than 10.0: 160
Number of HSP's better than 10.0 without gapping: 33139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36524
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
