Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC004218A_C01 KMC004218A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S51910 cryptogene protein G4 - Leishmania tarentolae (strai... 41 0.008
pir||A45612 H+-transporting ATP synthase protein 6 homolog - Lei... 37 0.11
pir||C26696 hypothetical protein (CYb-COII intergenic region) - ... 37 0.11
pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.... 36 0.25
ref|XP_286653.1| hypothetical protein XP_286653 [Mus musculus] 36 0.25
>pir||S51910 cryptogene protein G4 - Leishmania tarentolae (strain LEM125)
Length = 169
Score = 41.2 bits (95), Expect = 0.008
Identities = 24/79 (30%), Positives = 42/79 (52%), Gaps = 6/79 (7%)
Frame = -1
Query: 532 LCVLLHF-YMSFLCFLPL--YSLVLLFYLFLCSFFVLDSVVVFAMSL---VFFSLLFSWF 371
LCV+++F Y++F+C L Y ++LL FF+ +++F VF LL WF
Sbjct: 33 LCVMVYFIYIAFVCLFVLVCYVVILLLCFDCIVFFLFTVIIIFFFLFIFWVFIFLLLFWF 92
Query: 370 TWGTLSPYSFI*YIYFIFQ 314
+G L + ++ + F F+
Sbjct: 93 VFGFLFFFFYVCVLIFYFE 111
>pir||A45612 H+-transporting ATP synthase protein 6 homolog - Leishmania
tarentolae mitochondrion gi|340586|gb|AAA96695.1| ATPase
6 gi|340615|gb|AAA31882.1| MURF4
Length = 232
Score = 37.4 bits (85), Expect = 0.11
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Frame = -2
Query: 519 FISICPFYVSFPCTR*CCCFIFSFVLSLYLIV---------LLYLLCLL--FFLVCFSLG 373
+I C ++ + C CF+ F+L L+V L YLLC+L F L+C +
Sbjct: 82 YILFCIVFMYYMAFLFCFCFLLDFILFGSLLVGDAFMDVFFLRYLLCVLECFSLLCRCIS 141
Query: 372 SRGEPCPHILSSNIFTSSFKKTNIQ*IIMFVFFISC 265
+ ++LSS+ F II F+FFI C
Sbjct: 142 TFLRMFCNLLSSHFLMLMFCDFVYFFIIFFLFFIMC 177
>pir||C26696 hypothetical protein (CYb-COII intergenic region) - Leishmania
tarentolae mitochondrion
Length = 211
Score = 37.4 bits (85), Expect = 0.11
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 11/96 (11%)
Frame = -2
Query: 519 FISICPFYVSFPCTR*CCCFIFSFVLSLYLIV---------LLYLLCLL--FFLVCFSLG 373
+I C ++ + C CF+ F+L L+V L YLLC+L F L+C +
Sbjct: 61 YILFCIVFMYYMAFLFCFCFLLDFILFGSLLVGDAFMDVFFLRYLLCVLECFSLLCRCIS 120
Query: 372 SRGEPCPHILSSNIFTSSFKKTNIQ*IIMFVFFISC 265
+ ++LSS+ F II F+FFI C
Sbjct: 121 TFLRMFCNLLSSHFLMLMFCDFVYFFIIFFLFFIMC 156
>pir||S43955 probable NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 3,
kinetoplast - Trypanosoma brucei mitochondrion
(fragment) gi|468424|gb|AAA20887.1| CR5
Length = 150
Score = 36.2 bits (82), Expect = 0.25
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Frame = -1
Query: 532 LCVLLHFYMSFLCFL----PLYSL--VLLFY-----LFLCSFFVLDSVVVFAMSLVFFSL 386
LC LLHF+ F C L LY + L+FY C FFVL + ++ + VF +
Sbjct: 35 LCFLLHFFDCFRCCLWFSCGLYDMNSRLVFYTLDLCFVSCLFFVLLNSIICVLLFVFVIV 94
Query: 385 LFSWFTWGTLSPYSFI*YIYFI 320
LF +F +G L F+ +++F+
Sbjct: 95 LF-YFCYGFL----FLWFLFFV 111
>ref|XP_286653.1| hypothetical protein XP_286653 [Mus musculus]
Length = 115
Score = 36.2 bits (82), Expect = 0.25
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -2
Query: 528 VCFFISICPFYVSFPCTR*CCCFIFSFVLS---LYLIVLLYLLCLLFFLVC 385
VC +++C F +S CCC +F FVLS L++ +L + + ++ VC
Sbjct: 64 VCLSVNMCFFSLSLSILFCCCCNVFCFVLSCSGLFVFILSHFIIIINLDVC 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,065,512
Number of Sequences: 1393205
Number of extensions: 9351984
Number of successful extensions: 36637
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 32385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35988
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
